Molecular‐clock methods for estimating evolutionary rates and timescales
The molecular clock presents a means of estimating evolutionary rates and timescales using
genetic data. These estimates can lead to important insights into evolutionary processes and …
genetic data. These estimates can lead to important insights into evolutionary processes and …
Bayesian molecular clock dating of species divergences in the genomics era
Five decades have passed since the proposal of the molecular clock hypothesis, which
states that the rate of evolution at the molecular level is constant through time and among …
states that the rate of evolution at the molecular level is constant through time and among …
RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …
of models. Consequently, users of these software packages are simultaneously forced to …
A general species delimitation method with applications to phylogenetic placements
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …
microbial community surveys and DNA metabarcoding studies. Current approaches either …
The fossilized birth–death process for coherent calibration of divergence-time estimates
TA Heath, JP Huelsenbeck… - Proceedings of the …, 2014 - National Acad Sciences
Time-calibrated species phylogenies are critical for addressing a wide range of questions in
evolutionary biology, such as those that elucidate historical biogeography or uncover …
evolutionary biology, such as those that elucidate historical biogeography or uncover …
Total-evidence dating under the fossilized birth–death process
Bayesian total-evidence dating involves the simultaneous analysis of morphological data
from the fossil record and morphological and sequence data from recent organisms, and it …
from the fossil record and morphological and sequence data from recent organisms, and it …
Bayesian total-evidence dating reveals the recent crown radiation of penguins
The total-evidence approach to divergence time dating uses molecular and morphological
data from extant and fossil species to infer phylogenetic relationships, species divergence …
data from extant and fossil species to infer phylogenetic relationships, species divergence …
An unbiased molecular approach using 3′-UTRs resolves the avian family-level tree of life
H Kuhl, C Frankl-Vilches, A Bakker… - Molecular Biology …, 2021 - academic.oup.com
Presumably, due to a rapid early diversification, major parts of the higher-level phylogeny of
birds are still resolved controversially in different analyses or are considered unresolvable …
birds are still resolved controversially in different analyses or are considered unresolvable …
[图书][B] Molecular evolution: a statistical approach
Z Yang - 2014 - books.google.com
Studies of evolution at the molecular level have experienced phenomenal growth in the last
few decades, due to rapid accumulation of genetic sequence data, improved computer …
few decades, due to rapid accumulation of genetic sequence data, improved computer …
Using phylogenomic data to explore the effects of relaxed clocks and calibration strategies on divergence time estimation: primates as a test case
MD Reis, GF Gunnell, J Barba-Montoya… - Systematic …, 2018 - academic.oup.com
Primates have long been a test case for the development of phylogenetic methods for
divergence time estimation. Despite a large number of studies, however, the timing of …
divergence time estimation. Despite a large number of studies, however, the timing of …