The rpoB gene as a tool for clinical microbiologists

T Adékambi, M Drancourt, D Raoult - Trends in microbiology, 2009 - cell.com
The rpoB gene, encoding the β-subunit of RNA polymerase, has emerged as a core gene
candidate for phylogenetic analyses and identification of bacteria, especially when studying …

The diverse family of M mp L transporters in mycobacteria: from regulation to antimicrobial developments

A Viljoen, V Dubois, F Girard‐Misguich… - Molecular …, 2017 - Wiley Online Library
Mycobacterial genomes contain large sets of loci encoding membrane proteins that belong
to a family of multidrug resistance pumps designated Resistance‐Nodulation‐Cell Division …

Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel …

RS Gupta, B Lo, J Son - Frontiers in microbiology, 2018 - frontiersin.org
The genus Mycobacterium contains 188 species including several major human pathogens
as well as numerous other environmental species. We report here comprehensive …

Genomic characterization of nontuberculous mycobacteria

T Fedrizzi, CJ Meehan, A Grottola, E Giacobazzi… - Scientific reports, 2017 - nature.com
Mycobacterium tuberculosis and Mycobacterium leprae have remained, for many years, the
primary species of the genus Mycobacterium of clinical and microbiological interest. The …

The new phylogeny of the genus Mycobacterium: the old and the news

E Tortoli, T Fedrizzi, CJ Meehan, A Trovato… - Infection, Genetics and …, 2017 - Elsevier
Background Phylogenetic studies of bacteria have been based so far either on a single
gene (usually the 16S rRNA) or on concatenated housekeeping genes. For what concerns …

Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes

J Pascual, MC Macián, DR Arahal… - … of Systematic and …, 2010 - microbiologyresearch.org
The central clade of the genus Vibrio, also called the Vibrio core group, comprises six
species that are tightly related (DNA–DNA reassociation values are very close to 70% for …

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential

L Carro, I Nouioui, V Sangal, JP Meier-Kolthoff… - Scientific reports, 2018 - nature.com
There is a need to clarify relationships within the actinobacterial genus Micromonospora, the
type genus of the family Micromonosporaceae, given its biotechnological and ecological …

Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA–DNA hybridization, with proposal to combine 29 species and …

X Rong, Y Huang - International journal of systematic and …, 2010 - microbiologyresearch.org
Streptomyces griseus and related species form the biggest but least well-defined clade in
the whole Streptomyces 16S rRNA gene tree. Multilocus sequence analysis (MLSA) has …

Habitat structure and the evolution of diffusible siderophores in bacteria

R Kümmerli, KT Schiessl, T Waldvogel… - Ecology …, 2014 - Wiley Online Library
Bacteria typically rely on secreted metabolites, potentially shareable at the community level,
to scavenge resources from the environment. The evolution of diffusible, shareable …

Mycobacterial pan-genome analysis suggests important role of plasmids in the radiation of type VII secretion systems

E Dumas, E Christina Boritsch… - Genome Biology and …, 2016 - academic.oup.com
In mycobacteria, various type VII secretion systems corresponding to different ESX (ESAT-6
secretory) types, are contributing to pathogenicity, iron acquisition, and/or conjugation. In …