Classification and phylogeny of hydrogenases
PM Vignais, B Billoud, J Meyer - FEMS microbiology reviews, 2001 - academic.oup.com
Hydrogenases (H2ases) catalyze the reversible oxidation of molecular hydrogen and play a
central role in microbial energy metabolism. Most of these enzymes are found in Archaea …
central role in microbial energy metabolism. Most of these enzymes are found in Archaea …
A genomic view of alternative splicing
B Modrek, C Lee - Nature genetics, 2002 - nature.com
Recent genome-wide analyses of alternative splicing indicate that 40–60% of human genes
have alternative splice forms, suggesting that alternative splicing is one of the most …
have alternative splice forms, suggesting that alternative splicing is one of the most …
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
The construction of high capacity data sharing networks to support increasing government
and commercial data exchange has highlighted a key roadblock: the content of existing …
and commercial data exchange has highlighted a key roadblock: the content of existing …
Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice
Background Treatment with the α-glucosidase inhibitor acarbose increases median lifespan
by approximately 20% in male mice and 5% in females. This longevity extension differs from …
by approximately 20% in male mice and 5% in females. This longevity extension differs from …
The protein data bank
HM Berman, J Westbrook, Z Feng… - Nucleic acids …, 2000 - academic.oup.com
Abstract The Protein Data Bank (PDB; http://www. rcsb. org/pdb/) is the single worldwide
archive of structural data of biological macromolecules. This paper describes the goals of …
archive of structural data of biological macromolecules. This paper describes the goals of …
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
ABSTRACT The Ribosomal Database Project (RDP) Classifier, a naïve Bayesian
classifier, can rapidly and accurately classify bacterial 16S rRNA sequences into the new …
classifier, can rapidly and accurately classify bacterial 16S rRNA sequences into the new …
DAVID: database for annotation, visualization, and integrated discovery
G Dennis, BT Sherman, DA Hosack, J Yang, W Gao… - Genome biology, 2003 - Springer
The distributed nature of biological knowledge poses a major challenge to the interpretation
of genome-scale datasets, including those derived from microarray and proteomic studies …
of genome-scale datasets, including those derived from microarray and proteomic studies …
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
JJ Cannone, S Subramanian, MN Schnare… - BMC …, 2002 - Springer
Background Comparative analysis of RNA sequences is the basis for the detailed and
accurate predictions of RNA structure and the determination of phylogenetic relationships for …
accurate predictions of RNA structure and the determination of phylogenetic relationships for …
IntAct: an open source molecular interaction database
H Hermjakob, L Montecchi‐Palazzi… - Nucleic acids …, 2004 - academic.oup.com
IntAct provides an open source database and toolkit for the storage, presentation and
analysis of protein interactions. The web interface provides both textual and graphical …
analysis of protein interactions. The web interface provides both textual and graphical …
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
JR Cole, B Chai, RJ Farris, Q Wang… - Nucleic acids …, 2005 - academic.oup.com
Abstract The Ribosomal Database Project (RDP-II) provides the research community with
aligned and annotated rRNA gene sequences, along with analysis services and a …
aligned and annotated rRNA gene sequences, along with analysis services and a …