The role of protein loops and linkers in conformational dynamics and allostery
Proteins are dynamic entities that undergo a plethora of conformational changes that may
take place on a wide range of time scales. These changes can be as small as the rotation of …
take place on a wide range of time scales. These changes can be as small as the rotation of …
Psychrophilic enzymes: from folding to function and biotechnology
G Feller - Scientifica, 2013 - Wiley Online Library
Psychrophiles thriving permanently at near‐zero temperatures synthesize cold‐active
enzymes to sustain their cell cycle. Genome sequences, proteomic, and transcriptomic …
enzymes to sustain their cell cycle. Genome sequences, proteomic, and transcriptomic …
Structural flexibility and protein adaptation to temperature: Molecular dynamics analysis of malate dehydrogenases of marine molluscs
Orthologous proteins of species adapted to different temperatures exhibit differences in
stability and function that are interpreted to reflect adaptive variation in structural “flexibility.” …
stability and function that are interpreted to reflect adaptive variation in structural “flexibility.” …
Computer simulations explain the anomalous temperature optimum in a cold-adapted enzyme
J Sočan, M Purg, J Åqvist - Nature communications, 2020 - nature.com
Cold-adapted enzymes from psychrophilic species show the general characteristics of being
more heat labile, and having a different balance between enthalpic and entropic …
more heat labile, and having a different balance between enthalpic and entropic …
Comparing mutagenesis and simulations as tools for identifying functionally important sequence changes for protein thermal adaptation
Comparative studies of orthologous proteins of species evolved at different temperatures
have revealed consistent patterns of temperature-related variation in thermal stabilities of …
have revealed consistent patterns of temperature-related variation in thermal stabilities of …
Targeted Mutation of a Non-catalytic Gating Residue Increases the Rate of Pseudomonas aeruginosa d-Arginine Dehydrogenase Catalytic Turnover
Commercial food and l-amino acid industries rely on bioengineered d-amino acid oxidizing
enzymes to detect and remove d-amino acid contaminants. However, the bioengineering of …
enzymes to detect and remove d-amino acid contaminants. However, the bioengineering of …
Flexibility and Stability Trade-Off in Active Site of Cold-Adapted Pseudomonas mandelii Esterase EstK
N Truongvan, SH Jang, CW Lee - Biochemistry, 2016 - ACS Publications
Cold-adapted enzymes exhibit enhanced conformational flexibility, especially in their active
sites, as compared with their warmer-temperature counterparts. However, the mechanism by …
sites, as compared with their warmer-temperature counterparts. However, the mechanism by …
Crucial role of protein flexibility in formation of a stable reaction transition state in an α-amylase catalysis
T Kosugi, S Hayashi - Journal of the American Chemical Society, 2012 - ACS Publications
Conformational flexibility of proteins provides enzymes with high catalytic activity. Although
the conformational flexibility is known to be pivotal for the ligand binding and release, its role …
the conformational flexibility is known to be pivotal for the ligand binding and release, its role …
Dynamic properties of extremophilic subtilisin-like serine-proteases
The investigation of the structural determinants of enzymatic temperature adaptation is a
crucial pre-requisite both in terms of fundamental research and industrial applications to …
crucial pre-requisite both in terms of fundamental research and industrial applications to …
Molecular motions and free-energy landscape of serine proteinase K in relation to its cold-adaptation: A comparative molecular dynamics simulation study and the …
P Sang, X Du, LQ Yang, ZH Meng, SQ Liu - RSC advances, 2017 - pubs.rsc.org
The physicochemical bases for enzyme cold-adaptation remain elusive. The current view is
that psychrophilic enzymes are often characterized by enhanced flexibility at low …
that psychrophilic enzymes are often characterized by enhanced flexibility at low …