Pioneer transcription factors initiating gene network changes

KS Zaret - Annual review of genetics, 2020 - annualreviews.org
Pioneer transcription factors have the intrinsic biochemical ability to scan partial DNA
sequence motifs that are exposed on the surface of a nucleosome and thus access silent …

Chromatin accessibility and the regulatory epigenome

SL Klemm, Z Shipony, WJ Greenleaf - Nature Reviews Genetics, 2019 - nature.com
Physical access to DNA is a highly dynamic property of chromatin that plays an essential
role in establishing and maintaining cellular identity. The organization of accessible …

Generating specificity in genome regulation through transcription factor sensitivity to chromatin

L Isbel, RS Grand, D Schübeler - Nature Reviews Genetics, 2022 - nature.com
Cell type-specific gene expression relies on transcription factors (TFs) binding DNA
sequence motifs embedded in chromatin. Understanding how motifs are accessed in …

Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3

LA Farrelly, RE Thompson, S Zhao, AE Lepack, Y Lyu… - Nature, 2019 - nature.com
Chemical modifications of histones can mediate diverse DNA-templated processes,
including gene transcription,–. Here we provide evidence for a class of histone post …

The expanding landscape of 'oncohistone'mutations in human cancers

BA Nacev, L Feng, JD Bagert, AE Lemiesz, JJ Gao… - Nature, 2019 - nature.com
Mutations in epigenetic pathways are common oncogenic drivers. Histones, the fundamental
substrates for chromatin-modifying and remodelling enzymes, are mutated in tumours …

Histone variants at a glance

PB Talbert, S Henikoff - Journal of Cell Science, 2021 - journals.biologists.com
Eukaryotic nucleosomes organize chromatin by wrapping 147 bp of DNA around a histone
core particle comprising two molecules each of histone H2A, H2B, H3 and H4. The DNA …

Chromatin landscape signals differentially dictate the activities of mSWI/SNF family complexes

N Mashtalir, HT Dao, A Sankar, H Liu, AJ Corin… - Science, 2021 - science.org
Mammalian SWI/SNF (mSWI/SNF) adenosine triphosphate–dependent chromatin
remodelers modulate genomic architecture and gene expression and are frequently mutated …

Principles of nucleosome recognition by chromatin factors and enzymes

RK McGinty, S Tan - Current Opinion in Structural Biology, 2021 - Elsevier
The recent torrent of structures of chromatin complexes determined by cryoelectron
microscopy provides an opportunity to discern general principles for how chromatin factors …

Chemoenzymatic semisynthesis of proteins

RE Thompson, TW Muir - Chemical reviews, 2019 - ACS Publications
Protein semisynthesis—defined herein as the assembly of a protein from a combination of
synthetic and recombinant fragments—is a burgeoning field of chemical biology that has …

Chemical and biochemical perspectives of protein lysine methylation

M Luo - Chemical reviews, 2018 - ACS Publications
Protein lysine methylation is a distinct posttranslational modification that causes minimal
changes in the size and electrostatic status of lysine residues. Lysine methylation plays …