Multiscale heterogeneity in filamentous microbes
B Zacchetti, HAB Wösten, D Claessen - Biotechnology advances, 2018 - Elsevier
Microbial cells within clonal populations can display different morphologies or carry out
different tasks. This heterogeneity is beneficial at the population level and allows microbes …
different tasks. This heterogeneity is beneficial at the population level and allows microbes …
Fuzzy stochastic petri nets for modeling biological systems with uncertain kinetic parameters
Stochastic Petri nets (SPNs) have been widely used to model randomness which is an
inherent feature of biological systems. However, for many biological systems, some kinetic …
inherent feature of biological systems. However, for many biological systems, some kinetic …
Modeling stochastic phenotype switching and bet-hedging in bacteria: stochastic nonlinear dynamics and critical state identification
C Jia, M Qian, Y Kang, D Jiang - Quantitative Biology, 2014 - Springer
Fluctuating environments pose tremendous challenges to bacterial populations. It is
observed in numerous bacterial species that individual cells can stochastically switch …
observed in numerous bacterial species that individual cells can stochastically switch …
Unveiling the Dynamics behind Glioblastoma Multiforme Single-Cell Data Heterogeneity
MGV Junior, AMA Côrtes, FRG Carneiro… - International Journal of …, 2024 - mdpi.com
Glioblastoma Multiforme is a brain tumor distinguished by its aggressiveness. We suggested
that this aggressiveness leads single-cell RNA-sequence data (scRNA-seq) to span a …
that this aggressiveness leads single-cell RNA-sequence data (scRNA-seq) to span a …
[PDF][PDF] Statistical characterization of the dynamics of Glioblastoma Multiforme subtypes through parameters estimation of the epigenetic landscape
MGV Juniora, FRG Carneirob, AM de Almeida - 2023 - academia.edu
Glioblastoma Multiforme (GBM) is the most common and aggressive type of brain tumor.
With a median survival of around 15 months, it has only approximately a 10% chance of 5 …
With a median survival of around 15 months, it has only approximately a 10% chance of 5 …
Stochastic modeling suggests that noise reduces differentiation efficiency by inducing a heterogeneous drug response in glioma differentiation therapy
Background Glioma differentiation therapy is a novel strategy that has been used to induce
glioma cells to differentiate into glia-like cells. Although some advances in experimental …
glioma cells to differentiate into glia-like cells. Although some advances in experimental …
Information-thermodynamic characterization of stochastic Boolean networks
S Otsubo, T Sagawa - arXiv preprint arXiv:1803.04217, 2018 - arxiv.org
Recent progress in experimental techniques has enabled us to quantitatively study
stochastic and flexible behavior of biological systems. For example, gene regulatory …
stochastic and flexible behavior of biological systems. For example, gene regulatory …
A method for in silico exploration of potential Glioblastoma Multiforme attractors using single-cell RNA sequencing
MGV Junior, AM de Almeida Côrtes, FRG Carneiro… - 2024 - researchsquare.com
We presented a method to find potential cancer attractors using single-cell RNA sequencing
(scRNA-seq) data. We tested our method in a Glioblastoma Multiforme (GBM) dataset, an …
(scRNA-seq) data. We tested our method in a Glioblastoma Multiforme (GBM) dataset, an …
Switching Langevin Dynamics for Gene Regulatory Networks
N Vélez-Cruz, B Moraffah… - 2022 56th Asilomar …, 2022 - ieeexplore.ieee.org
We consider the problem of estimating a gene regulatory network under switching noise
dynamics. Several stochastic models based on discretized Langevin dynamics are …
dynamics. Several stochastic models based on discretized Langevin dynamics are …
Unveiling dynamics behind Glioblastoma Multiforme single-cell data heterogeneity
MG Vieira Junior, AM de Almeida Côrtes… - bioRxiv, 2023 - biorxiv.org
Glioblastoma Multiforme (GBM), a brain tumor distinguished for its aggressive nature,
presents heterogeneity that stems from multifaceted mechanisms, such as genetic …
presents heterogeneity that stems from multifaceted mechanisms, such as genetic …