[HTML][HTML] Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses
We aimed to develop and validate a new graph embedding algorithm for embedding drug-
disease-target networks to generate novel drug repurposing hypotheses. Our model …
disease-target networks to generate novel drug repurposing hypotheses. Our model …
How to achieve better results using PASS-based virtual screening: Case study for kinase inhibitors
PV Pogodin, AA Lagunin, AV Rudik… - Frontiers in …, 2018 - frontiersin.org
Discovery of new pharmaceutical substances is currently boosted by the possibility of
utilization of the Synthetically Accessible Virtual Inventory (SAVI) library, which includes …
utilization of the Synthetically Accessible Virtual Inventory (SAVI) library, which includes …
Coevolutionary landscape of kinase family proteins: sequence probabilities and functional motifs
The protein kinase catalytic domain is one of the most abundant domains across all
branches of life. Although kinases share a common core function of phosphoryl-transfer …
branches of life. Although kinases share a common core function of phosphoryl-transfer …
3D similarities between the binding sites of monoaminergic target proteins
G Nunez-Vivanco, A Fierro, P Moya… - PloS one, 2018 - journals.plos.org
The study of binding site similarities can be relevant to understand the interaction of different
drugs at several molecular targets. The increasing availability of protein crystal structures …
drugs at several molecular targets. The increasing availability of protein crystal structures …
Geomfinder: A multi-feature identifier of similar three-dimensional protein patterns: A ligand-independent approach
Background Since the structure of proteins is more conserved than the sequence, the
identification of conserved three-dimensional (3D) patterns among a set of proteins, can be …
identification of conserved three-dimensional (3D) patterns among a set of proteins, can be …
Kinase inhibitors
The strategy of applying kinase inhibitors as effective therapeutic agents has achieved
unparalleled success in the past decade, while it is still a daunting challenge to develop …
unparalleled success in the past decade, while it is still a daunting challenge to develop …
Inhibitor binding to mutants of protein kinase A with GGGxxG and GxGxxA glycine‐rich loop motifs
The conserved GxGxxG motif of protein kinases forms a beta turn at the tip of the flexible
glycine‐rich loop and creates much of the ATP pocket binding surface. Notable exceptions …
glycine‐rich loop and creates much of the ATP pocket binding surface. Notable exceptions …
Structure-guided selection of specificity determining positions in the human Kinome
Background The human kinome contains many important drug targets. It is well-known that
inhibitors of protein kinases bind with very different selectivity profiles. This is also the case …
inhibitors of protein kinases bind with very different selectivity profiles. This is also the case …
Data driven polypharmacological drug design for lung cancer: analyses for targeting ALK, MET, and EGFR
D Narayanan, OA Gani, FXE Gruber… - Journal of Cheminformatics, 2017 - Springer
Drug design of protein kinase inhibitors is now greatly enabled by thousands of publicly
available X-ray structures, extensive ligand binding data, and optimized scaffolds coming off …
available X-ray structures, extensive ligand binding data, and optimized scaffolds coming off …
Données de" vraie vie" des inhibiteurs de protéines kinases dans la leucémie myéloïde chronique: profil d'utilisation à l'échelle française et impacts des interactions …
MCP Tchapda - 2022 - theses.hal.science
L'introduction des inhibiteurs des protéines kinases (IPK) dans le traitement de la Leucémie
Myéloïde Chronique (LMC) a considérablement changé le paradigme de cette pathologie …
Myéloïde Chronique (LMC) a considérablement changé le paradigme de cette pathologie …