[HTML][HTML] Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses

C Moon, C Jin, X Dong, S Abrar, W Zheng… - Journal of biomedical …, 2021 - Elsevier
We aimed to develop and validate a new graph embedding algorithm for embedding drug-
disease-target networks to generate novel drug repurposing hypotheses. Our model …

How to achieve better results using PASS-based virtual screening: Case study for kinase inhibitors

PV Pogodin, AA Lagunin, AV Rudik… - Frontiers in …, 2018 - frontiersin.org
Discovery of new pharmaceutical substances is currently boosted by the possibility of
utilization of the Synthetically Accessible Virtual Inventory (SAVI) library, which includes …

Coevolutionary landscape of kinase family proteins: sequence probabilities and functional motifs

A Haldane, WF Flynn, P He, RM Levy - Biophysical journal, 2018 - cell.com
The protein kinase catalytic domain is one of the most abundant domains across all
branches of life. Although kinases share a common core function of phosphoryl-transfer …

3D similarities between the binding sites of monoaminergic target proteins

G Nunez-Vivanco, A Fierro, P Moya… - PloS one, 2018 - journals.plos.org
The study of binding site similarities can be relevant to understand the interaction of different
drugs at several molecular targets. The increasing availability of protein crystal structures …

Geomfinder: A multi-feature identifier of similar three-dimensional protein patterns: A ligand-independent approach

G Núñez-Vivanco, A Valdés-Jiménez, F Besoaín… - Journal of …, 2016 - Springer
Background Since the structure of proteins is more conserved than the sequence, the
identification of conserved three-dimensional (3D) patterns among a set of proteins, can be …

Kinase inhibitors

P Wu, M Givskov, TE Nielsen - Drug Selectivity: An Evolving …, 2017 - Wiley Online Library
The strategy of applying kinase inhibitors as effective therapeutic agents has achieved
unparalleled success in the past decade, while it is still a daunting challenge to develop …

Inhibitor binding to mutants of protein kinase A with GGGxxG and GxGxxA glycine‐rich loop motifs

KA Alam, OA Gani, RA Engh - Journal of Molecular Recognition, 2021 - Wiley Online Library
The conserved GxGxxG motif of protein kinases forms a beta turn at the tip of the flexible
glycine‐rich loop and creates much of the ATP pocket binding surface. Notable exceptions …

Structure-guided selection of specificity determining positions in the human Kinome

M Moll, PW Finn, LE Kavraki - BMC genomics, 2016 - Springer
Background The human kinome contains many important drug targets. It is well-known that
inhibitors of protein kinases bind with very different selectivity profiles. This is also the case …

Data driven polypharmacological drug design for lung cancer: analyses for targeting ALK, MET, and EGFR

D Narayanan, OA Gani, FXE Gruber… - Journal of Cheminformatics, 2017 - Springer
Drug design of protein kinase inhibitors is now greatly enabled by thousands of publicly
available X-ray structures, extensive ligand binding data, and optimized scaffolds coming off …

Données de" vraie vie" des inhibiteurs de protéines kinases dans la leucémie myéloïde chronique: profil d'utilisation à l'échelle française et impacts des interactions …

MCP Tchapda - 2022 - theses.hal.science
L'introduction des inhibiteurs des protéines kinases (IPK) dans le traitement de la Leucémie
Myéloïde Chronique (LMC) a considérablement changé le paradigme de cette pathologie …