Harnessing genomics to fast-track genetic improvement in aquaculture
Aquaculture is the fastest-growing farmed food sector and will soon become the primary
source of fish and shellfish for human diets. In contrast to crop and livestock production …
source of fish and shellfish for human diets. In contrast to crop and livestock production …
Genomic selection: genome-wide prediction in plant improvement
Association analysis is used to measure relations between markers and quantitative trait loci
(QTL). Their estimation ignores genes with small effects that trigger underpinning …
(QTL). Their estimation ignores genes with small effects that trigger underpinning …
Overfitting, model tuning, and evaluation of prediction performance
OA Montesinos López, A Montesinos López… - … learning methods for …, 2022 - Springer
The overfitting phenomenon happens when a statistical machine learning model learns very
well about the noise as well as the signal that is present in the training data. On the other …
well about the noise as well as the signal that is present in the training data. On the other …
Pitfalls of predicting complex traits from SNPs
The success of genome-wide association studies (GWASs) has led to increasing interest in
making predictions of complex trait phenotypes, including disease, from genotype data …
making predictions of complex trait phenotypes, including disease, from genotype data …
Whole-genome regression and prediction methods applied to plant and animal breeding
G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …
[HTML][HTML] Physiological breeding
M Reynolds, P Langridge - Current opinion in plant biology, 2016 - Elsevier
Highlights•New crop designs capitalize on over half a century of physiological
research.•Remote sensing permits evaluation of genetic resources for complex trait …
research.•Remote sensing permits evaluation of genetic resources for complex trait …
Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement
To address the multiple challenges to food security posed by global climate change,
population growth and rising incomes, plant breeders are developing new crop varieties that …
population growth and rising incomes, plant breeders are developing new crop varieties that …
Breeding beyond monoculture: putting the “intercrop” into crops
Intercropping is both a well-established and yet novel agricultural practice, depending on
one's perspective. Such perspectives are principally governed by geographic location and …
one's perspective. Such perspectives are principally governed by geographic location and …
[PDF][PDF] Enhancing genetic gain through genomic selection: from livestock to plants
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …
[HTML][HTML] Integrating multi-omics data for crop improvement
Our agricultural systems are now in urgent need to secure food for a growing world
population. To meet this challenge, we need a better characterization of plant genetic and …
population. To meet this challenge, we need a better characterization of plant genetic and …