Complexity of the alternative splicing landscape in plants

ASN Reddy, Y Marquez, M Kalyna, A Barta - The Plant Cell, 2013 - academic.oup.com
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …

Signal transduction in maize and Arabidopsis mesophyll protoplasts

J Sheen - Plant Physiology, 2001 - academic.oup.com
Plant protoplasts show physiological perceptions and responses to hormones, metabolites,
environmental cues, and pathogen-derived elicitors, similar to cell-autonomous responses …

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

Y Marquez, JWS Brown, C Simpson, A Barta… - Genome …, 2012 - genome.cshlp.org
Alternative splicing (AS) is a key regulatory mechanism that contributes to transcriptome and
proteome diversity. As very few genome-wide studies analyzing AS in plants are available …

Splice Site Prediction in Arabidopsis Thaliana Pre-mRNA by Combining Local and Global Sequence Information

SM Hebsgaard, PG Korning, N Tolstrup… - Nucleic acids …, 1996 - academic.oup.com
Artificial neural networks have been combined with a rule based system to predict intron
splice sites in the dicot plant Arabidopsis thaliana. A two step prediction scheme, where a …

Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly

J Haseloff, KR Siemering… - Proceedings of the …, 1997 - National Acad Sciences
The green fluorescent protein (GFP) from the jellyfish Aequorea victoria is finding wide use
as a genetic marker that can be directly visualized in the living cells of many heterologous …

Modification of the coding sequence enhances plant expression of insect control protein genes.

FJ Perlak, RL Fuchs, DA Dean… - Proceedings of the …, 1991 - National Acad Sciences
Increased expression of the insect control protein genes of Bacillus thuringiensis in plants
has been critical to the development of genetically improved plants with agronomically …

Intron retention in mRNA: No longer nonsense: Known and putative roles of intron retention in normal and disease biology

JJL Wong, AYM Au, W Ritchie, JEJ Rasko - Bioessays, 2016 - Wiley Online Library
Until recently, retention of introns in mature mRNAs has been regarded as a consequence of
mis‐splicing. Intron‐retaining transcripts are thought to be non‐functional because they are …

High‐frequency homologous recombination in plants mediated by zinc‐finger nucleases

DA Wright, JA Townsend, RJ Winfrey Jr… - The Plant …, 2005 - Wiley Online Library
Homologous recombination offers great promise for plant genome engineering. This
promise has not been realized, however, because when DNA enters plant cells homologous …

Geminiviruses: genome structure and gene function

SG Lazarowitz, RJ Shepherd - Critical Reviews in Plant Sciences, 1992 - Taylor & Francis
The plant pathogenic single‐strand DNA‐containing geminiviruses have been the recent
focus of intense investigation, owing both to their agronomic importance and to their …

Genetically improved potatoes: protection from damage by Colorado potato beetles

FJ Perlak, TB Stone, YM Muskopf, LJ Petersen… - Plant molecular …, 1993 - Springer
Russet Burbank potato plants have been genetically improved to resist insect attack and
damage by Colorado potato beetles (Leptinotarsa decemlineata (Say)) by the insertion of a …