Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …
Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary
sequences used to understand plant diversity and evolution. We introduce a high …
sequences used to understand plant diversity and evolution. We introduce a high …
Rapid evolution of protein diversity by de novo origination in Oryza
New protein-coding genes that arise de novo from non-coding DNA sequences contribute to
protein diversity. However, de novo gene origination is challenging to study as it requires …
protein diversity. However, de novo gene origination is challenging to study as it requires …
Gene fusion as an important mechanism to generate new genes in the genus Oryza
Background Events of gene fusion have been reported in several organisms. However, the
general role of gene fusion as part of new gene origination remains unknown. Results We …
general role of gene fusion as part of new gene origination remains unknown. Results We …
APOK3, a pollen killer antidote in Arabidopsis thaliana
M Simon, S Durand, A Ricou, N Vrielynck… - Genetics, 2022 - academic.oup.com
The principles of heredity state that the two alleles carried by a heterozygote are equally
transmitted to the progeny. However, genomic regions that escape this rule have been …
transmitted to the progeny. However, genomic regions that escape this rule have been …
Emergence of a novel chimeric gene underlying grain number in rice
H Chen, Y Tang, J Liu, L Tan, J Jiang, M Wang, Z Zhu… - Genetics, 2017 - academic.oup.com
Grain number is an important factor in determining grain production of rice (Oryza sativa L.).
The molecular genetic basis for grain number is complex. Discovering new genes involved …
The molecular genetic basis for grain number is complex. Discovering new genes involved …
Evolutionary fates and dynamic functionalization of young duplicate genes in Arabidopsis genomes
Gene duplication is a primary means to generate genomic novelties, playing an essential
role in speciation and adaptation. Particularly in plants, a high abundance of duplicate …
role in speciation and adaptation. Particularly in plants, a high abundance of duplicate …
Genetic Dissection of Seed Dormancy using Chromosome Segment Substitution Lines in Rice (Oryza sativa L.)
S Yuan, Y Wang, C Zhang, H He, S Yu - International journal of molecular …, 2020 - mdpi.com
Timing of germination determines whether a new plant life cycle can be initiated; therefore,
appropriate dormancy and rapid germination under diverse environmental conditions are …
appropriate dormancy and rapid germination under diverse environmental conditions are …
Reproductive long intergenic noncoding RNAs exhibit male gamete specificity and polycomb repressive complex 2-mediated repression
C Johnson, LJ Conrad, R Patel, S Anderson… - Plant …, 2018 - academic.oup.com
Long noncoding RNAs (lncRNAs) have been characterized extensively in animals and are
involved in several processes, including homeobox gene expression and X-chromosome …
involved in several processes, including homeobox gene expression and X-chromosome …
DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements
Background Mutator-like transposable elements, a class of DNA transposons, exist
pervasively in both prokaryotic and eukaryotic genomes, with more than 10,000 copies …
pervasively in both prokaryotic and eukaryotic genomes, with more than 10,000 copies …