Plant antimicrobial peptides: structures, functions, and applications

J Li, S Hu, W Jian, C Xie, X Yang - Botanical Studies, 2021 - Springer
Antimicrobial peptides (AMPs) are a class of short, usually positively charged polypeptides
that exist in humans, animals, and plants. Considering the increasing number of drug …

Gaussian accelerated molecular dynamics: Principles and applications

J Wang, PR Arantes, A Bhattarai… - Wiley …, 2021 - Wiley Online Library
Gaussian accelerated molecular dynamics (GaMD) is a robust computational method for
simultaneous unconstrained enhanced sampling and free energy calculations of …

[HTML][HTML] Peptaibiotics: harnessing the potential of microbial secondary metabolites for mitigation of plant pathogens

L Pereira-Dias, PR Oliveira-Pinto, JO Fernandes… - Biotechnology …, 2023 - Elsevier
Agricultural systems are in need of low-cost, safe antibiotics to protect crops from pests and
diseases. Peptaibiotics, a family of linear, membrane-active, amphipathic polypeptides, have …

[HTML][HTML] Peptaibols: Diversity, bioactivity, and biosynthesis

X Hou, R Sun, Y Feng, R Zhang, T Zhu, Q Che… - Engineering …, 2022 - Elsevier
Peptaibols are a large family of linear, amphipathic polypeptides consisting of 5-20 amino
acid residues generated from the fungal nonribosomal peptide synthetase (NRPS) pathway …

[HTML][HTML] Estimation of pore dimensions in lipid membranes induced by peptides and other biomolecules: A review

B Bertrand, R Garduño-Juárez… - Biochimica et Biophysica …, 2021 - Elsevier
The cytoplasmic membrane is one of the most frequent cell targets of antimicrobial peptides
(AMPs) and other biomolecules. Understanding the mechanism of action of AMPs at the …

Flexible Gaussian Accelerated Molecular Dynamics to Enhance Biological Sampling

O Gracia Carmona, C Oostenbrink - Journal of Chemical Theory …, 2023 - ACS Publications
Molecular dynamics simulations often struggle to obtain sufficient sampling to study complex
molecular events due to high energy barriers separating the minima of interest. Multiple …

Sigmoid accelerated molecular dynamics: An efficient enhanced sampling method for biosystems

Y Zhao, J Zhang, H Zhang, S Gu, Y Deng… - The Journal of …, 2023 - ACS Publications
Gaussian accelerated molecular dynamics (GaMD) is recognized as a popular enhanced
sampling method for tackling long-standing challenges in biomolecular simulations. Inspired …

The Functionality of Membrane-Inserting Proteins and Peptides: Curvature Sensing, Generation, and Pore Formation

C Has, SL Das - The Journal of Membrane Biology, 2023 - Springer
Proteins and peptides with hydrophobic and amphiphilic segments are responsible for many
biological functions. The sensing and generation of membrane curvature are the functions of …

Binding analysis using accelerated molecular dynamics simulations and future perspectives

S Pawnikar, A Bhattarai, J Wang… - … and Applications in …, 2022 - Taylor & Francis
Biomolecular recognition such as binding of small molecules, nucleic acids, peptides and
proteins to their target receptors plays key roles in cellular function and has been targeted …

Harnessing the power of Arctium lappa root: a review of its pharmacological properties and therapeutic applications

M Shyam, EP Sabina - Natural Products and Bioprospecting, 2024 - Springer
Arctium lappa, widely recognized as burdock, is a perennial plant that is employed in the
realm of traditional Chinese medicine for a wide range of medicinal applications. The herb is …