Epigenetic regulatory layers in the 3D nucleus

A Willemin, D Szabó, A Pombo - Molecular Cell, 2024 - cell.com
Nearly 7 decades have elapsed since Francis Crick introduced the central dogma of
molecular biology, as part of his ideas on protein synthesis, setting the fundamental rules of …

Transcriptional Regulation and Implications for Controlling Hox Gene Expression

Z Afzal, R Krumlauf - Journal of Developmental Biology, 2022 - mdpi.com
Hox genes play key roles in axial patterning and regulating the regional identity of cells and
tissues in a wide variety of animals from invertebrates to vertebrates. Nested domains of Hox …

Topological structures and syntenic conservation in sea anemone genomes

B Zimmermann, JD Montenegro, SMC Robb… - Nature …, 2023 - nature.com
There is currently little information about the evolution of gene clusters, genome
architectures and karyotypes in early branching animals. Slowly evolving anthozoan …

Establishing the pattern of the vertebrate limb

C McQueen, M Towers - Development, 2020 - journals.biologists.com
The vertebrate limb continues to serve as an influential model of growth, morphogenesis
and pattern formation. With this Review, we aim to give an up-to-date picture of how a …

Sea anemone genomes reveal ancestral metazoan chromosomal macrosynteny

B Zimmermann, JD Montenegro, SMC Robb, WJ Fropf… - BioRxiv, 2020 - biorxiv.org
Draft genome sequences of non-bilaterian species have provided important insights into the
evolution of the metazoan gene repertoire. However, there is little information about the …

Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?

M Mir, W Bickmore, EEM Furlong, G Narlikar - Development, 2019 - journals.biologists.com
In the past decade, two major advances in our understanding of nuclear organization have
taken the field of gene regulation by storm. First, technologies that can analyze the three …

Chromatin topology and the timing of enhancer function at the HoxD locus

E Rodríguez-Carballo… - Proceedings of the …, 2020 - National Acad Sciences
The HoxD gene cluster is critical for proper limb formation in tetrapods. In the emerging limb
buds, different subgroups of Hoxd genes respond first to a proximal regulatory signal, then to …

The regulatory landscapes of developmental genes

CC Bolt, D Duboule - Development, 2020 - journals.biologists.com
Regulatory landscapes have been defined in vertebrates as large DNA segments containing
diverse enhancer sequences that produce coherent gene transcription. These genomic …

Changes in chromatin accessibility landscape and histone H3 core acetylation during valproic acid-induced differentiation of embryonic stem cells

C Baumann, X Zhang, L Zhu, Y Fan… - Epigenetics & …, 2021 - Springer
Directed differentiation of mouse embryonic stem cells (mESCs) or induced pluripotent stem
cells (iPSCs) provides powerful models to dissect the molecular mechanisms leading to the …

Polycomb Repressive Complexes in Hox Gene Regulation: Silencing and Beyond: The Functional Dynamics of Polycomb Repressive Complexes in Hox Gene …

C Gentile, M Kmita - BioEssays, 2020 - Wiley Online Library
The coordinated expression of the Hox gene family encoding transcription factors is critical
for proper embryonic development and patterning. Major efforts have thus been dedicated to …