[HTML][HTML] CRISPR in cancer biology and therapy

A Katti, BJ Diaz, CM Caragine, NE Sanjana… - Nature Reviews …, 2022 - nature.com
Over the past decade, CRISPR has become as much a verb as it is an acronym,
transforming biomedical research and providing entirely new approaches for dissecting all …

Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

AV Anzalone, LW Koblan, DR Liu - Nature biotechnology, 2020 - nature.com
The development of new CRISPR–Cas genome editing tools continues to drive major
advances in the life sciences. Four classes of CRISPR–Cas-derived genome editing agents …

Autism genes converge on asynchronous development of shared neuron classes

B Paulsen, S Velasco, AJ Kedaigle, M Pigoni… - Nature, 2022 - nature.com
Genetic risk for autism spectrum disorder (ASD) is associated with hundreds of genes
spanning a wide range of biological functions,,,,–. The alterations in the human brain …

High-speed fluorescence image–enabled cell sorting

D Schraivogel, TM Kuhn, B Rauscher… - Science, 2022 - science.org
Fast and selective isolation of single cells with unique spatial and morphological traits
remains a technical challenge. Here, we address this by establishing high-speed image …

[HTML][HTML] Genome-wide CRISPR screens reveal host factors critical for SARS-CoV-2 infection

J Wei, MM Alfajaro, PC DeWeirdt, RE Hanna… - Cell, 2021 - cell.com
Identification of host genes essential for severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) infection may reveal novel therapeutic targets and inform our understanding …

Predicting prime editing efficiency and product purity by deep learning

N Mathis, A Allam, L Kissling, KF Marquart… - Nature …, 2023 - nature.com
Prime editing is a versatile genome editing tool but requires experimental optimization of the
prime editing guide RNA (pegRNA) to achieve high editing efficiency. Here we conducted a …

In vivo CRISPR screens reveal the landscape of immune evasion pathways across cancer

J Dubrot, PP Du, SK Lane-Reticker, EA Kessler… - Nature …, 2022 - nature.com
The immune system can eliminate tumors, but checkpoints enable immune escape. Here,
we identify immune evasion mechanisms using genome-scale in vivo CRISPR screens …

Epigenetic silencing by SETDB1 suppresses tumour intrinsic immunogenicity

GK Griffin, J Wu, A Iracheta-Vellve, JC Patti, J Hsu… - Nature, 2021 - nature.com
Epigenetic dysregulation is a defining feature of tumorigenesis that is implicated in immune
escape,. Here, to identify factors that modulate the immune sensitivity of cancer cells, we …

[HTML][HTML] ApE, a plasmid editor: a freely available DNA manipulation and visualization program

MW Davis, EM Jorgensen - Frontiers in Bioinformatics, 2022 - frontiersin.org
A plasmid Editor (ApE) is a free, multi-platform application for visualizing, designing, and
presenting biologically relevant DNA sequences. ApE provides a flexible framework for …

[HTML][HTML] Latest developed strategies to minimize the off-target effects in CRISPR-Cas-mediated genome editing

M Naeem, S Majeed, MZ Hoque, I Ahmad - Cells, 2020 - mdpi.com
Gene editing that makes target gene modification in the genome by deletion or addition has
revolutionized the era of biomedicine. Clustered regularly interspaced short palindromic …