Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

[HTML][HTML] Metagenomics and artificial intelligence in the context of human health

AK Wani, P Roy, V Kumar - Infection, Genetics and Evolution, 2022 - Elsevier
Human microbiome is ubiquitous, dynamic, and site-specific consortia of microbial
communities. The pathogenic nature of microorganisms within human tissues has led to an …

An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson's disease participants

DA Hall, RM Voigt, TM Cantu-Jungles… - Nature …, 2023 - nature.com
A pro-inflammatory intestinal microbiome is characteristic of Parkinson's disease (PD).
Prebiotic fibers change the microbiome and this study sought to understand the utility of …

Depth-resolved microbial diversity and functional profiles of trichloroethylene-contaminated soils for Biolog EcoPlate-based biostimulation strategy

S Koner, JS Chen, BM Hsu, J Rathod… - Journal of hazardous …, 2022 - Elsevier
This study explores the toxic effect of TCE at different depths of sub-surface soil and
underpins microbial community-level suitable carbon (C)-sources that provided directionality …

Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota

S Kawamoto, K Uemura, N Hori, L Takayasu… - Nature Cell …, 2023 - nature.com
The elucidation of the mechanisms of ageing and the identification of methods to control it
have long been anticipated. Recently, two factors associated with ageing—the accumulation …

COVID-19 pandemic reveals the peril of ignoring metadata standards

LM Schriml, M Chuvochina, N Davies… - Scientific data, 2020 - nature.com
Efficient response to the pandemic through the mobilization of the larger scientific
community is challenged by the limited reusability of the available primary genomic data …

The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota

P Bermudez-Martin, JAJ Becker, N Caramello… - Microbiome, 2021 - Springer
Background Autism spectrum disorders (ASD) are associated with dysregulation of the
microbiota-gut-brain axis, changes in microbiota composition as well as in the fecal, serum …

Ecological role of bacteria involved in the biogeochemical cycles of mangroves based on functional genes detected through GeoChip 5.0

S Meng, T Peng, X Liu, H Wang, T Huang, JD Gu, Z Hu - Msphere, 2022 - Am Soc Microbiol
Mangroves provide a variety of ecosystem services and contribute greatly to the global
biogeochemical cycle. Microorganisms play important roles in biogeochemical cycles and …

Underpinning the ecological response of mixed chlorinated volatile organic compounds (CVOCs) associated with contaminated and bioremediated groundwaters: a …

B Hussain, JS Chen, SW Huang, IS Tsai, J Rathod… - Environmental …, 2023 - Elsevier
Understanding the structure, dynamics, and functionality of microbial communities is
essential for developing sustainable and effective bioremediation strategies, particularly for …

A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies

SM Rosales, LK Huebner, JS Evans… - ISME …, 2023 - academic.oup.com
Stony coral tissue loss disease (SCTLD) has been causing significant whole colony mortality
on reefs in Florida and the Caribbean. The cause of SCTLD remains unknown, with the …