[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

A decade of advances in transposon-insertion sequencing

AK Cain, L Barquist, AL Goodman, IT Paulsen… - Nature Reviews …, 2020 - nature.com
It has been 10 years since the introduction of modern transposon-insertion sequencing (TIS)
methods, which combine genome-wide transposon mutagenesis with high-throughput …

A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9

L Cui, A Vigouroux, F Rousset, H Varet… - Nature …, 2018 - nature.com
High-throughput CRISPR-Cas9 screens have recently emerged as powerful tools to
decipher gene functions and genetic interactions. Here we use a genome-wide library of …

CRISPR-assisted rational flux-tuning and arrayed CRISPRi screening of an l-proline exporter for l-proline hyperproduction

J Liu, M Liu, T Shi, G Sun, N Gao, X Zhao… - Nature …, 2022 - nature.com
Abstract Development of hyperproducing strains is important for biomanufacturing of
biochemicals and biofuels but requires extensive efforts to engineer cellular metabolism and …

A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

F Rosconi, E Rudmann, J Li, D Surujon, J Anthony… - Nature …, 2022 - nature.com
Many bacterial species are represented by a pan-genome, whose genetic repertoire far
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …

Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi

JM Peters, BM Koo, R Patino, GE Heussler… - Nature …, 2019 - nature.com
The vast majority of bacteria, including human pathogens and microbiome species, lack
genetic tools needed to systematically associate genes with phenotypes. This is the major …

Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors

F Rousset, L Cui, E Siouve, C Becavin… - PLoS …, 2018 - journals.plos.org
High-throughput genetic screens are powerful methods to identify genes linked to a given
phenotype. The catalytic null mutant of the Cas9 RNA-guided nuclease (dCas9) can be …

Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi

HH Lee, N Ostrov, BG Wong, MA Gold, AS Khalil… - Nature …, 2019 - nature.com
The fast-growing Gram-negative bacterium Vibrio natriegens is an attractive microbial
system for molecular biology and biotechnology due to its remarkably short generation time …

High-throughput mapping of the phage resistance landscape in E. coli

VK Mutalik, BA Adler, HS Rishi, D Piya, C Zhong… - PLoS …, 2020 - journals.plos.org
Bacteriophages (phages) are critical players in the dynamics and function of microbial
communities and drive processes as diverse as global biogeochemical cycles and human …

Approaches to genetic tool development for rapid domestication of non-model microorganisms

LA Riley, AM Guss - Biotechnology for Biofuels, 2021 - Springer
Non-model microorganisms often possess complex phenotypes that could be important for
the future of biofuel and chemical production. They have received significant interest the last …