[HTML][HTML] High-content CRISPR screening
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …
interrogation of gene function in a wide range of applications and species. In pooled …
A decade of advances in transposon-insertion sequencing
It has been 10 years since the introduction of modern transposon-insertion sequencing (TIS)
methods, which combine genome-wide transposon mutagenesis with high-throughput …
methods, which combine genome-wide transposon mutagenesis with high-throughput …
A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9
High-throughput CRISPR-Cas9 screens have recently emerged as powerful tools to
decipher gene functions and genetic interactions. Here we use a genome-wide library of …
decipher gene functions and genetic interactions. Here we use a genome-wide library of …
CRISPR-assisted rational flux-tuning and arrayed CRISPRi screening of an l-proline exporter for l-proline hyperproduction
J Liu, M Liu, T Shi, G Sun, N Gao, X Zhao… - Nature …, 2022 - nature.com
Abstract Development of hyperproducing strains is important for biomanufacturing of
biochemicals and biofuels but requires extensive efforts to engineer cellular metabolism and …
biochemicals and biofuels but requires extensive efforts to engineer cellular metabolism and …
A bacterial pan-genome makes gene essentiality strain-dependent and evolvable
Many bacterial species are represented by a pan-genome, whose genetic repertoire far
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …
Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi
The vast majority of bacteria, including human pathogens and microbiome species, lack
genetic tools needed to systematically associate genes with phenotypes. This is the major …
genetic tools needed to systematically associate genes with phenotypes. This is the major …
Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors
High-throughput genetic screens are powerful methods to identify genes linked to a given
phenotype. The catalytic null mutant of the Cas9 RNA-guided nuclease (dCas9) can be …
phenotype. The catalytic null mutant of the Cas9 RNA-guided nuclease (dCas9) can be …
Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi
The fast-growing Gram-negative bacterium Vibrio natriegens is an attractive microbial
system for molecular biology and biotechnology due to its remarkably short generation time …
system for molecular biology and biotechnology due to its remarkably short generation time …
High-throughput mapping of the phage resistance landscape in E. coli
Bacteriophages (phages) are critical players in the dynamics and function of microbial
communities and drive processes as diverse as global biogeochemical cycles and human …
communities and drive processes as diverse as global biogeochemical cycles and human …
Approaches to genetic tool development for rapid domestication of non-model microorganisms
Non-model microorganisms often possess complex phenotypes that could be important for
the future of biofuel and chemical production. They have received significant interest the last …
the future of biofuel and chemical production. They have received significant interest the last …