How does RNA fold dynamically?
Recent advances in interrogating RNA folding dynamics have shown the classical model of
RNA folding to be incomplete. Here, we pose three prominent questions for the field that are …
RNA folding to be incomplete. Here, we pose three prominent questions for the field that are …
A roadmap for rRNA folding and assembly during transcription
ML Rodgers, SA Woodson - Trends in biochemical sciences, 2021 - cell.com
Ribonucleoprotein (RNP) assembly typically begins during transcription when folding of the
newly synthesized RNA is coupled with the recruitment of RNA-binding proteins (RBPs) …
newly synthesized RNA is coupled with the recruitment of RNA-binding proteins (RBPs) …
A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery
In prokaryotes, translation can occur on mRNA that is being transcribed in a process called
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …
Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates
MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur… - Molecular cell, 2021 - cell.com
The series of RNA folding events that occur during transcription can critically influence
cellular RNA function. Here, we present reconstructing RNA dynamics from data (R2D2), a …
cellular RNA function. Here, we present reconstructing RNA dynamics from data (R2D2), a …
Observation of coordinated RNA folding events by systematic cotranscriptional RNA structure probing
CE Szyjka, EJ Strobel - Nature Communications, 2023 - nature.com
RNA begins to fold as it is transcribed by an RNA polymerase. Consequently, RNA folding is
constrained by the direction and rate of transcription. Understanding how RNA folds into …
constrained by the direction and rate of transcription. Understanding how RNA folds into …
Next generation single-molecule techniques: Imaging, labeling, and manipulation in vitro and in cellulo
Owing to their unique abilities to manipulate, label, and image individual molecules in vitro
and in cellulo, single-molecule techniques provide previously unattainable access to …
and in cellulo, single-molecule techniques provide previously unattainable access to …
The development of single molecule force spectroscopy: from polymer biophysics to molecular machines
C Bustamante, S Yan - Quarterly Reviews of Biophysics, 2022 - cambridge.org
The advent of single-molecule force spectroscopy represents the introduction of forces,
torques, and displacements as controlled variables in biochemistry. These methods afford …
torques, and displacements as controlled variables in biochemistry. These methods afford …
Determination of protein–protein interactions at the single-molecule level using optical tweezers
WN Sánchez, L Robeson, V Carrasco… - Quarterly Reviews of …, 2022 - cambridge.org
Biomolecular interactions are at the base of all physical processes within living organisms;
the study of these interactions has led to the development of a plethora of different methods …
the study of these interactions has led to the development of a plethora of different methods …
Upstream flanking sequence assists folding of an RNA thermometer
EA Jolley, KM Bormes, PC Bevilacqua - Journal of molecular biology, 2022 - Elsevier
Many heat shock genes in bacteria are regulated through a class of temperature-sensitive
stem-loop (SL) RNAs called RNA thermometers (RNATs). One of the most widely studied …
stem-loop (SL) RNAs called RNA thermometers (RNATs). One of the most widely studied …
Spatiotemporal kinetics of the SRP pathway in live E. coli cells
IL Volkov, E Lundin, K Kipper… - Proceedings of the …, 2022 - National Acad Sciences
Mechanistic details of the signal recognition particle (SRP)-mediated insertion of membrane
proteins have been described from decades of in vitro biochemical studies. However, the …
proteins have been described from decades of in vitro biochemical studies. However, the …