Gene regulation and speciation

KL Mack, MW Nachman - Trends in Genetics, 2017 - cell.com
Understanding the genetic architecture of speciation is a major goal in evolutionary biology.
Hybrid dysfunction is thought to arise most commonly through negative interactions between …

An integrated view of protein evolution

C Pál, B Papp, MJ Lercher - Nature reviews genetics, 2006 - nature.com
Why do proteins evolve at different rates? Advances in systems biology and genomics have
facilitated a move from studying individual proteins to characterizing global cellular factors …

ProbCons: Probabilistic consistency-based multiple sequence alignment

CB Do, MSP Mahabhashyam, M Brudno… - Genome …, 2005 - genome.cshlp.org
To study gene evolution across a wide range of organisms, biologists need accurate tools
for multiple sequence alignment of protein families. Obtaining accurate alignments …

Deep metazoan phylogeny: when different genes tell different stories

T Nosenko, F Schreiber, M Adamska, M Adamski… - Molecular phylogenetics …, 2013 - Elsevier
Molecular phylogenetic analyses have produced a plethora of controversial hypotheses
regarding the patterns of diversification of non-bilaterian animals. To unravel the causes for …

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes

X You, C Bian, Q Zan, X Xu, X Liu, J Chen… - Nature …, 2014 - nature.com
Mudskippers are amphibious fishes that have developed morphological and physiological
adaptations to match their unique lifestyles. Here we perform whole-genome sequencing of …

Meiosis evolves: adaptation to external and internal environments

K Bomblies, JD Higgins, L Yant - New Phytologist, 2015 - Wiley Online Library
Meiosis is essential for the fertility of most eukaryotes and its structures and progression are
conserved across kingdoms. Yet many of its core proteins show evidence of rapid or …

Darwinian evolution in the light of genomics

EV Koonin - Nucleic acids research, 2009 - academic.oup.com
Comparative genomics and systems biology offer unprecedented opportunities for testing
central tenets of evolutionary biology formulated by Darwin in the Origin of Species in 1859 …

Compensatory cis-trans Evolution and the Dysregulation of Gene Expression in Interspecific Hybrids of Drosophila

CR Landry, PJ Wittkopp, CH Taubes, JM Ranz… - Genetics, 2005 - academic.oup.com
Hybrids between species are often characterized by novel gene-expression patterns. A
recent study on allele-specific gene expression in hybrids between species of Drosophila …

Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and …

B Lemos, BR Bettencourt… - … biology and evolution, 2005 - academic.oup.com
Organismic evolution requires that variation at distinct hierarchical levels and attributes be
coherently integrated, often in the face of disparate environmental and genetic pressures. A …

Large-scale snake genome analyses provide insights into vertebrate development

C Peng, DD Wu, JL Ren, ZL Peng, Z Ma, W Wu, Y Lv… - Cell, 2023 - cell.com
Snakes are a remarkable squamate lineage with unique morphological adaptations,
especially those related to the evolution of vertebrate skeletons, organs, and sensory …