Contextualizing context for synthetic biology–identifying causes of failure of synthetic biological systems

S Cardinale, AP Arkin - Biotechnology journal, 2012 - Wiley Online Library
Despite the efforts that bioengineers have exerted in designing and constructing biological
processes that function according to a predetermined set of rules, their operation remains …

Foundations for the design and implementation of synthetic genetic circuits

AL Slusarczyk, A Lin, R Weiss - Nature Reviews Genetics, 2012 - nature.com
Synthetic gene circuits are designed to program new biological behaviour, dynamics and
logic control. For all but the simplest synthetic phenotypes, this requires a structured …

Synthetic biology: an emerging engineering discipline

AA Cheng, TK Lu - Annual review of biomedical engineering, 2012 - annualreviews.org
Over the past decade, synthetic biology has emerged as an engineering discipline for
biological systems. Compared with other substrates, biology poses a unique set of …

Tuning response curves for synthetic biology

J Ang, E Harris, BJ Hussey, R Kil… - ACS synthetic …, 2013 - ACS Publications
Synthetic biology may be viewed as an effort to establish, formalize, and develop an
engineering discipline in the context of biological systems. The ability to tune the properties …

[HTML][HTML] Design principles of regulatory networks: searching for the molecular algorithms of the cell

WA Lim, CM Lee, C Tang - Molecular cell, 2013 - cell.com
A challenge in biology is to understand how complex molecular networks in the cell execute
sophisticated regulatory functions. Here we explore the idea that there are common and …

Engineered E. coli That Detect and Respond to Gut Inflammation through Nitric Oxide Sensing

EJ Archer, AB Robinson, GM Süel - ACS synthetic biology, 2012 - ACS Publications
Advances in synthetic biology now allow for the reprogramming of microorganisms to
execute specific tasks. Here, we describe the development of an engineered strain of E. coli …

[HTML][HTML] Detection of bioavailable cadmium by double-color fluorescence based on a dual-sensing bioreporter system

C Hui, Y Guo, J Wu, L Liu, X Yang, X Guo… - Frontiers in …, 2021 - frontiersin.org
Cadmium (Cd) is carcinogenic to humans and can accumulate in the liver, kidneys, and
bones. There is widespread presence of cadmium in the environment as a consequence of …

Engineered temperature compensation in a synthetic genetic clock

F Hussain, C Gupta, AJ Hirning, W Ott… - Proceedings of the …, 2014 - National Acad Sciences
Synthetic biology promises to revolutionize biotechnology by providing the means to
reengineer and reprogram cellular regulatory mechanisms. However, synthetic gene circuits …

Synthetic robust perfect adaptation achieved by negative feedback coupling with linear weak positive feedback

Z Sun, W Wei, M Zhang, W Shi, Y Zong… - Nucleic Acids …, 2022 - academic.oup.com
Unlike their natural counterparts, synthetic genetic circuits are usually fragile in the face of
environmental perturbations and genetic mutations. Several theoretical robust genetic …

[HTML][HTML] A synthetic circuit for buffering gene dosage variation between individual mammalian cells

J Yang, J Lee, MA Land, S Lai, OA Igoshin… - Nature …, 2021 - nature.com
Precise control of gene expression is critical for biological research and biotechnology.
However, transient plasmid transfections in mammalian cells produce a wide distribution of …