Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

A brief history of de novo protein design: minimal, rational, and computational

DN Woolfson - Journal of Molecular Biology, 2021 - Elsevier
Protein design has come of age, but how will it mature? In the 1980s and the 1990s, the
primary motivation for de novo protein design was to test our understanding of the …

De novo metalloprotein design

MJ Chalkley, SI Mann, WF DeGrado - Nature Reviews Chemistry, 2022 - nature.com
Natural metalloproteins perform many functions—ranging from sensing to electron transfer
and catalysis—in which the position and property of each ligand and metal are dictated by …

Arabidopsis FLL2 promotes liquid–liquid phase separation of polyadenylation complexes

X Fang, L Wang, R Ishikawa, Y Li, M Fiedler, F Liu… - Nature, 2019 - nature.com
An important component of cellular biochemistry is the concentration of proteins and nucleic
acids in non-membranous compartments,. These biomolecular condensates are formed …

DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences

J Ludwiczak, A Winski, K Szczepaniak, V Alva… - …, 2019 - academic.oup.com
Motivation Coiled coils are protein structural domains that mediate a plethora of biological
interactions, and thus their reliable annotation is crucial for studies of protein structure and …

The structural biology of septins and their filaments: an update

IA Cavini, DA Leonardo, HVD Rosa… - Frontiers in Cell and …, 2021 - frontiersin.org
In order to fully understand any complex biochemical system from a mechanistic point of
view, it is necessary to have access to the three-dimensional structures of the molecular …

Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns

WS Horne, TN Grossmann - Nature chemistry, 2020 - nature.com
Proteins have evolved as a variable platform that provides access to molecules with diverse
shapes, sizes and functions. These features have inspired chemists for decades to seek …

Two-component sensing and regulation: how do histidine kinases talk with response regulators at the molecular level?

A Buschiazzo, F Trajtenberg - Annual review of microbiology, 2019 - annualreviews.org
Perceiving environmental and internal information and reacting in adaptive ways are
essential attributes of living organisms. Two-component systems are relevant protein …

C CB uilder 2.0: Powerful and accessible coiled‐coil modeling

CW Wood, DN Woolfson - Protein Science, 2018 - Wiley Online Library
The increased availability of user‐friendly and accessible computational tools for
biomolecular modeling would expand the reach and application of biomolecular …

De novo designed peptides for cellular delivery and subcellular localisation

GG Rhys, JA Cross, WM Dawson… - Nature Chemical …, 2022 - nature.com
Increasingly, it is possible to design peptide and protein assemblies de novo from first
principles or computationally. This approach provides new routes to functional synthetic …