Structure, dynamics, assembly, and evolution of protein complexes

JA Marsh, SA Teichmann - Annual review of biochemistry, 2015 - annualreviews.org
The assembly of individual proteins into functional complexes is fundamental to nearly all
biological processes. In recent decades, many thousands of homomeric and heteromeric …

Structural, evolutionary, and assembly principles of protein oligomerization

ED Levy, SA Teichmann - Progress in molecular biology and translational …, 2013 - Elsevier
Abstract In the protein universe, 30–50% of proteins self-assemble to form symmetrical
complexes consisting of multiple copies of themselves, called homomers. The prevalence of …

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

K Hashimoto, AR Panchenko - Proceedings of the National …, 2010 - National Acad Sciences
The main principles of protein-protein recognition are elucidated by the studies of
homooligomers which in turn mediate and regulate gene expression, activity of enzymes …

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

K Hashimoto, H Nishi, S Bryant… - Physical biology, 2011 - iopscience.iop.org
Many soluble and membrane proteins form homooligomeric complexes in a cell which are
responsible for the diversity and specificity of many pathways, may mediate and regulate …

Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization

H Nishi, K Hashimoto, T Madej… - Progress in molecular …, 2013 - Elsevier
Protein homooligomers afford several important benefits for the cell; they mediate and
regulate gene expression, activity of many enzymes, ion channels, receptors, and cell–cell …

[HTML][HTML] Molecular basis for protein–protein interactions

BC Seychell, T Beck - Beilstein journal of organic chemistry, 2021 - beilstein-journals.org
This minireview provides an overview on the current knowledge of protein–protein
interactions, common characterisation methods to characterise them, and their role in …

Underlying features for the enhanced electrostatic strength of the extremophilic malate dehydrogenase interface salt-bridge compared to the mesophilic one

C Roy, RNU Islam, S Banerjee… - Journal of …, 2023 - Taylor & Francis
Malate dehydrogenase (MDH) exists in multimeric form in normal and extreme solvent
conditions where residues of the interface are involved in specific interactions. The interface …

Exploring QSARs for inhibitory effect of a set of heterocyclic thrombin inhibitors by multilinear regression refined by artificial neural network and molecular docking …

G Ramírez-Galicia, R Garduño-Juárez… - Journal of Enzyme …, 2012 - Taylor & Francis
Several non-peptide heterocyclic compounds reported as potent thrombin inhibitors in vitro
were chosen to carry out a QSAR study upon them using MLR and ANN analysis. In order to …

Cover and spacer insertions: small nonhydrophobic accessories that assist protein oligomerization

H Nishi, R Koike, M Ota - Proteins: Structure, Function, and …, 2011 - Wiley Online Library
We investigated fragmental sequences that were inserted into proteins during long
molecular evolution and relevant to the association of homo‐oligomers. Seventeen …

SCPC: a method to structurally compare protein complexes

R Koike, M Ota - Bioinformatics, 2012 - academic.oup.com
Motivation: Protein–protein interactions play vital functional roles in various biological
phenomena. Physical contacts between proteins have been revealed using experimental …