Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics

T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …

Liquid–liquid phase separation drives cellular function and dysfunction in cancer

S Mehta, J Zhang - Nature Reviews Cancer, 2022 - nature.com
Cancer is a disease of uncontrollably reproducing cells. It is governed by biochemical
pathways that have escaped the regulatory bounds of normal homeostatic balance. This …

Integrator endonuclease drives promoter-proximal termination at all RNA polymerase II-transcribed loci

CB Stein, AR Field, CA Mimoso, CC Zhao, KL Huang… - Molecular cell, 2022 - cell.com
Summary RNA polymerase II (RNAPII) pausing in early elongation is critical for gene
regulation. Paused RNAPII can be released into productive elongation by the kinase P-TEFb …

Integrator is a global promoter-proximal termination complex

EJ Wagner, L Tong, K Adelman - Molecular cell, 2023 - cell.com
Integrator is a metazoan-specific protein complex capable of inducing termination at all
RNAPII-transcribed loci. Integrator recognizes paused, promoter-proximal RNAPII and …

Structural basis of Integrator-mediated transcription regulation

I Fianu, Y Chen, C Dienemann, O Dybkov, A Linden… - Science, 2021 - science.org
Integrator and protein phosphatase 2A (PP2A) form a complex that dephosphorylates
paused RNA polymerase II (Pol II), cleaves the nascent RNA, and terminates transcription …

Genomic regulation of transcription and RNA processing by the multitasking Integrator complex

SA Welsh, A Gardini - Nature Reviews Molecular Cell Biology, 2023 - nature.com
In higher eukaryotes, fine-tuned activation of protein-coding genes and many non-coding
RNAs pivots around the regulated activity of RNA polymerase II (Pol II). The Integrator …

LncRNAs in human cancers: signal from noise

S Adnane, A Marino, E Leucci - Trends in cell biology, 2022 - cell.com
Given the biochemical reaction stochasticity, the mechanisms leading to conservation of
biological functions from noise are obscure. Pervasive transcription of nonconserved …

Integrator is a genome-wide attenuator of non-productive transcription

S Lykke-Andersen, K Žumer, EŠ Molska, JO Rouvière… - Molecular cell, 2021 - cell.com
Termination of RNA polymerase II (RNAPII) transcription in metazoans relies largely on the
cleavage and polyadenylation (CPA) and integrator (INT) complexes originally found to act …

Paraspeckle nuclear condensates: Global sensors of cell stress?

F McCluggage, AH Fox - Bioessays, 2021 - Wiley Online Library
Paraspeckles are nuclear condensates, or membranelees organelles, that are built on the
long noncoding RNA, NEAT1, and have been linked to many diseases. Although originally …

Expression and functions of long non-coding RNA NEAT1 and isoforms in breast cancer

E Knutsen, AL Harris, M Perander - British journal of cancer, 2022 - nature.com
NEAT1 is a highly abundant nuclear architectural long non-coding RNA. There are two
overlapping NEAT1 isoforms, NEAT1_1 and NEAT1_2, of which the latter is an essential …