Microbial production of advanced biofuels

J Keasling, H Garcia Martin, TS Lee… - Nature Reviews …, 2021 - nature.com
Concerns over climate change have necessitated a rethinking of our transportation
infrastructure. One possible alternative to carbon-polluting fossil fuels is biofuels produced …

Modelling cell metabolism: a review on constraint-based steady-state and kinetic approaches

M Yasemi, M Jolicoeur - Processes, 2021 - mdpi.com
Studying cell metabolism serves a plethora of objectives such as the enhancement of
bioprocess performance, and advancement in the understanding of cell biology, of drug …

Yeast as a cell factory: current state and perspectives

M Kavšček, M Stražar, T Curk, K Natter, U Petrovič - Microbial cell factories, 2015 - Springer
The yeast Saccharomyces cerevisiae is one of the oldest and most frequently used
microorganisms in biotechnology with successful applications in the production of both bulk …

Recombinant protein production in Pichia pastoris: from transcriptionally redesigned strains to bioprocess optimization and metabolic modelling

BG Ergün, J Berrios, B Binay, P Fickers - FEMS Yeast Research, 2021 - academic.oup.com
Pichia pastoris is one of the most widely used host for the production of recombinant
proteins. Expression systems that rely mostly on promoters from genes encoding alcohol …

Metabolic modelling as a framework for metabolomics data integration and analysis

S Volkova, MRA Matos, M Mattanovich, I Marín de Mas - Metabolites, 2020 - mdpi.com
Metabolic networks are regulated to ensure the dynamic adaptation of biochemical reaction
fluxes to maintain cell homeostasis and optimal metabolic fitness in response to …

[HTML][HTML] Development of fungal cell factories for the production of secondary metabolites: Linking genomics and metabolism

JC Nielsen, J Nielsen - Synthetic and Systems Biotechnology, 2017 - Elsevier
The genomic era has revolutionized research on secondary metabolites and bioinformatics
methods have in recent years revived the antibiotic discovery process after decades with …

[HTML][HTML] Use of CellNetAnalyzer in biotechnology and metabolic engineering

A von Kamp, S Thiele, O Hädicke, S Klamt - Journal of biotechnology, 2017 - Elsevier
Mathematical models of the cellular metabolism have become an essential tool for the
optimization of biotechnological processes. They help to obtain a systemic understanding of …

[HTML][HTML] Next-generation feedstocks methanol and ethylene glycol and their potential in industrial biotechnology

N Wagner, L Wen, CJR Frazão, T Walther - Biotechnology Advances, 2023 - Elsevier
Microbial fermentation processes are expected to play an important role in reducing
dependence on fossil-based raw materials for the production of everyday chemicals. In …

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints

S Klamt, G Regensburger, MP Gerstl… - PLoS computational …, 2017 - journals.plos.org
Elementary flux modes (EFMs) emerged as a formal concept to describe metabolic
pathways and have become an established tool for constraint-based modeling and …

[HTML][HTML] Heading in the right direction: thermodynamics-based network analysis and pathway engineering

M Ataman, V Hatzimanikatis - Current opinion in biotechnology, 2015 - Elsevier
Highlights•Reaction directionalities versus enzyme reversibility: role of thermodynamics.•
Assessment of methods for thermodynamics-based analysis of metabolic …