Maximally localized Wannier functions: Theory and applications

N Marzari, AA Mostofi, JR Yates, I Souza… - Reviews of Modern …, 2012 - APS
The electronic ground state of a periodic system is usually described in terms of extended
Bloch orbitals, but an alternative representation in terms of localized “Wannier functions” …

Multiscale hybrid simulation methods for material systems

G Csányi, T Albaret, G Moras, MC Payne… - Journal of Physics …, 2005 - iopscience.iop.org
We review recent progress in the field of multiscale hybrid computer simulations of materials,
and present an overview of a novel scheme that links arbitrary atomistic simulation …

Numerical analysis of circular graphene bubbles

P Wang, W Gao, Z Cao… - Journal of Applied …, 2013 - asmedigitalcollection.asme.org
Pressurized graphene bubbles have been observed in experiments, which can be used to
determine the mechanical and adhesive properties of graphene. A nonlinear plate theory is …

Structural transformations of carbon nanotubes under hydrostatic pressure

P Tangney, RB Capaz, CD Spataru, ML Cohen… - Nano …, 2005 - ACS Publications
We used simulations with a classical force field to study the transformation under hydrostatic
pressure of isolated single-walled nanotubes (SWNT) from a circular to a collapsed cross …

Mechanisms of the wurtzite to rocksalt transformation in CdSe nanocrystals

M Grünwald, E Rabani, C Dellago - Physical review letters, 2006 - APS
We study the pressure-driven phase transition from the four-coordinate wurtzite to the six-
coordinate rocksalt structure in CdSe nanocrystals with molecular dynamics computer …

Hydrostatic pressure effects on the structural and electronic properties of carbon nanotubes

RB Capaz, CD Spataru, P Tangney… - … status solidi (b), 2004 - Wiley Online Library
We study the structural and electronic properties of isolated single‐wall carbon nanotubes
(SWNTs) under hydrostatic pressure using a combination of theoretical techniques …

Atomistic mechanisms for wurtzite-to-rocksalt structural transformation in cadmium selenide under pressure

F Shimojo, S Kodiyalam, I Ebbsjö, RK Kalia… - Physical Review B …, 2004 - APS
The pressure-induced structural transformation in cadmium selenide is studied with the
isothermal-isobaric molecular-dynamics method and electronic-structure calculations based …

[PDF][PDF] An introduction to maximally-localized wannier functions

N Marzari, I Souza, D Vanderbilt - Psi-K newsletter, 2003 - psi-k.net
The electronic ground state of a periodic system is usually described in terms of extended
Bloch orbitals, simultaneous eigenstates of the periodic Hamiltonian and of the direct lattice …

[HTML][HTML] RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites

H Ma, H Wen, Z Xue, G Li, Z Zhang - PLOS Computational Biology, 2022 - journals.plos.org
RNA molecules can adopt stable secondary and tertiary structures, which are essential in
mediating physical interactions with other partners such as RNA binding proteins (RBPs) …

Pressure-induced amorphization and a new high density amorphous metallic phase in matrix-free Ge nanoparticles

NRC Corsini, Y Zhang, WR Little, A Karatutlu… - Nano Letters, 2015 - ACS Publications
Over the last two decades, it has been demonstrated that size effects have significant
consequences for the atomic arrangements and phase behavior of matter under extreme …