[HTML][HTML] D-LMBmap: a fully automated deep-learning pipeline for whole-brain profiling of neural circuitry
Z Li, Z Shang, J Liu, H Zhen, E Zhu, S Zhong… - Nature …, 2023 - nature.com
Recent proliferation and integration of tissue-clearing methods and light-sheet fluorescence
microscopy has created new opportunities to achieve mesoscale three-dimensional whole …
microscopy has created new opportunities to achieve mesoscale three-dimensional whole …
High-contrast en bloc staining of mouse whole-brain and human brain samples for EM-based connectomics
K Song, Z Feng, M Helmstaedter - Nature Methods, 2023 - nature.com
Connectomes of human cortical gray matter require high-contrast homogeneously stained
samples sized at least 2 mm on a side, and a mouse whole-brain connectome requires …
samples sized at least 2 mm on a side, and a mouse whole-brain connectome requires …
Quantum Neurobiology
M Swan, RP dos Santos, F Witte - Quantum Reports, 2022 - mdpi.com
Quantum neurobiology is concerned with potential quantum effects operating in the brain
and the application of quantum information science to neuroscience problems, the latter of …
and the application of quantum information science to neuroscience problems, the latter of …
RoboEM: automated 3D flight tracing for synaptic-resolution connectomics
Mapping neuronal networks from three-dimensional electron microscopy (3D-EM) data still
poses substantial reconstruction challenges, in particular for thin axons. Currently available …
poses substantial reconstruction challenges, in particular for thin axons. Currently available …
Generative and discriminative model-based approaches to microscopic image restoration and segmentation
Image processing is one of the most important applications of recent machine learning (ML)
technologies. Convolutional neural networks (CNNs), a popular deep learning-based ML …
technologies. Convolutional neural networks (CNNs), a popular deep learning-based ML …
Sparse projection oblique randomer forests
Decision forests, including Random Forests and Gradient Boosting Trees, have recently
demonstrated state-of-the-art performance in a variety of machine learning settings …
demonstrated state-of-the-art performance in a variety of machine learning settings …
Graph partitioning algorithms with biological connectivity decisions for neuron reconstruction in electron microscope volumes
B Hong, J Liu, L Shen, Q Xie, J Yuan… - Expert Systems with …, 2023 - Elsevier
Neuron reconstruction algorithms used in electron microscope volumes have received
increasing attention in recent years. Most current methods are highly reliant on neuron …
increasing attention in recent years. Most current methods are highly reliant on neuron …
Dendritic spine density scales with microtubule number in rat hippocampal dendrites
Microtubules deliver essential resources to and from synapses. Three-dimensional
reconstructions in rat hippocampus reveal a sampling bias regarding spine density that …
reconstructions in rat hippocampus reveal a sampling bias regarding spine density that …
MTNeuro: a benchmark for evaluating representations of brain structure across multiple levels of abstraction
There are multiple scales of abstraction from which we can describe the same image,
depending on whether we are focusing on fine-grained details or a more global attribute of …
depending on whether we are focusing on fine-grained details or a more global attribute of …
A novel 3D instance segmentation network for synapse reconstruction from serial electron microscopy images
Synapses are fundamental components of how neurons communicate with each other and
have attracted widespread attention from neuroscientists. Due to the rapid development of …
have attracted widespread attention from neuroscientists. Due to the rapid development of …