Systems biology approaches to bioremediation

V de Lorenzo - Current opinion in biotechnology, 2008 - Elsevier
Bioremediation involves the exposure of a whole mixture of chemical structures to an
intricate multispecies metabolic network present in a polluted scenario. The complexity …

Bacterial metabolism of polychlorinated biphenyls

DH Pieper, M Seeger - Journal of molecular microbiology and …, 2008 - karger.com
Microbial metabolism is responsible for the removal of persistent organic pollutants
including PCBs from the environment. Anaerobic dehalogenation of highly chlorinated …

The Tomato Rhizosphere, an Environment Rich in Nitrogen-Fixing Burkholderia Species with Capabilities of Interest for Agriculture and Bioremediation

J Caballero-Mellado, J Onofre-Lemus… - Applied and …, 2007 - Am Soc Microbiol
Burkholderia strains are promising candidates for biotechnological applications.
Unfortunately, most of these strains belong to species of the Burkholderia cepacia complex …

Recent advances in molecular techniques to study microbial communities in food-associated matrices and processes

A Justé, B Thomma, B Lievens - Food microbiology, 2008 - Elsevier
In the last two decades major changes have occurred in how microbial ecologists study
microbial communities. Limitations associated with traditional culture-based methods have …

Aerobic degradation of crude oil by microorganisms in soils from four geographic regions of China

Q Liu, J Tang, K Gao, R Gurav, JP Giesy - Scientific Reports, 2017 - nature.com
A microcosm experiment was conducted for 112 d by spiking petroleum hydrocarbons into
soils from four regions of China. Molecular analyses of soils from microcosms revealed …

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation

ME Guazzaroni, FA Herbst, I Lores, J Tamames… - The ISME …, 2013 - academic.oup.com
Microbial metabolism in aromatic-contaminated environments has important ecological
implications, and obtaining a complete understanding of this process remains a relevant …

A poke into the diversity and associations within human anterior nare microbial communities

ML Wos-Oxley, I Plumeier, C Von Eiff… - The ISME …, 2010 - academic.oup.com
The anterior nares are the major reservoir for Staphylococcus aureus in humans, where
nasal carriage has a crucial function as a source for invasive infections. Despite various …

Electrical stimulation of microbial PCB degradation in sediment

CL Chun, RB Payne, KR Sowers, HD May - Water research, 2013 - Elsevier
Bioremediation of polychlorinated biphenyls (PCBs) has been precluded in part by the lack
of a cost-effective method to stimulate microbial degradation in situ. A common limitation is …

Distribution of petroleum degrading genes and factor analysis of petroleum contaminated soil from the Dagang Oilfield, China

Q Liu, J Tang, Z Bai, M Hecker, JP Giesy - Scientific Reports, 2015 - nature.com
Genes that encode for enzymes that can degrade petroleum hydrocarbons (PHs) are critical
for the ability of microorganisms to bioremediate soils contaminated with PHs. Distributions …

Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes

R Vilchez‐Vargas, H Junca… - Environmental …, 2010 - Wiley Online Library
Microbial degradation is the main mechanism responsible for the recovery of contaminated
sites, where a huge body of investigations is available in which most concentrate on single …