Epigenetic regulation of human placental function and pregnancy outcome: considerations for causal inference

V Januar, G Desoye, B Novakovic, S Cvitic… - American journal of …, 2015 - Elsevier
Epigenetic mechanisms, often defined as regulating gene activity independently of
underlying DNA sequence, are crucial for healthy development. The sum total of epigenetic …

Do all roads lead to Oct4? The emerging concepts of induced pluripotency

A Radzisheuskaya, JCR Silva - Trends in cell biology, 2014 - cell.com
Pluripotent cells have the potential to differentiate into all of the cell types of an animal. This
unique cell state is governed by an interconnected network of transcription factors. Among …

[HTML][HTML] Histone modifications regulate pioneer transcription factor cooperativity

KK Sinha, S Bilokapic, Y Du, D Malik, M Halic - Nature, 2023 - nature.com
Pioneer transcription factors have the ability to access DNA in compacted chromatin.
Multiple transcription factors can bind together to a regulatory element in a cooperative way …

Epiblast inducers capture mouse trophectoderm stem cells in vitro and pattern blastoids for implantation in utero

J Seong, J Frias-Aldeguer, V Holzmann, H Kagawa… - Cell stem cell, 2022 - cell.com
The embryo instructs the allocation of cell states to spatially regulate functions. In the
blastocyst, patterning of trophoblast (TR) cells ensures successful implantation and …

[HTML][HTML] Excluding Oct4 from Yamanaka cocktail unleashes the developmental potential of iPSCs

S Velychko, K Adachi, KP Kim, Y Hou, CM MacCarthy… - Cell Stem Cell, 2019 - cell.com
Oct4 is widely considered the most important among the four Yamanaka reprogramming
factors. Here, we show that the combination of Sox2, Klf4, and cMyc (SKM) suffices for …

Dissecting embryonic and extraembryonic lineage crosstalk with stem cell co-culture

Y Wei, E Zhang, L Yu, B Ci, M Sakurai, L Guo, X Zhang… - Cell, 2023 - cell.com
Embryogenesis necessitates harmonious coordination between embryonic and
extraembryonic tissues. Although stem cells of both embryonic and extraembryonic origins …

Probing cell identity hierarchies by fate titration and collision during direct reprogramming

BA Hersbach, DS Fischer, G Masserdotti… - Molecular Systems …, 2022 - embopress.org
Despite the therapeutic promise of direct reprogramming, basic principles concerning fate
erasure and the mechanisms to resolve cell identity conflicts remain unclear. To tackle these …

Diversity among POU transcription factors in chromatin recognition and cell fate reprogramming

V Malik, D Zimmer, R Jauch - Cellular and Molecular Life Sciences, 2018 - Springer
Abstract The POU (Pit-Oct-Unc) protein family is an evolutionary ancient group of
transcription factors (TFs) that bind specific DNA sequences to direct gene expression …

The principles that govern transcription factor network functions in stem cells

H Niwa - Development, 2018 - journals.biologists.com
Tissue-specific transcription factors primarily act to define the phenotype of the cell. The
power of a single transcription factor to alter cell fate is often minimal, as seen in gain-of …

Nanog, Oct4 and Tet1 interplay in establishing pluripotency

V Olariu, C Lövkvist, K Sneppen - Scientific reports, 2016 - nature.com
A few central transcription factors inside mouse embryonic stem (ES) cells and induced
pluripotent stem (iPS) cells are believed to control the cells' pluripotency. Characterizations …