Computational methods for RNA modification detection from nanopore direct RNA sequencing data
M Furlan, A Delgado-Tejedor, L Mulroney… - RNA biology, 2021 - Taylor & Francis
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs
and has fundamental roles in the regulation of several cellular processes. Mapping the …
and has fundamental roles in the regulation of several cellular processes. Mapping the …
The epitranscriptome toolbox
S Moshitch-Moshkovitz, D Dominissini, G Rechavi - Cell, 2022 - cell.com
In the last decade, the notion that mRNA modifications are involved in regulation of gene
expression was demonstrated in thousands of studies. To date, new technologies and …
expression was demonstrated in thousands of studies. To date, new technologies and …
Molecular diagnosis of COVID-19: challenges and research needs
W Feng, AM Newbigging, C Le, B Pang… - Analytical …, 2020 - ACS Publications
Molecular diagnosis of COVID-19 primarily relies on the detection of RNA of the SARS-CoV-
2 virus, the causative infectious agent of the pandemic. Reverse transcription polymerase …
2 virus, the causative infectious agent of the pandemic. Reverse transcription polymerase …
A call for direct sequencing of full-length RNAs to identify all modifications
JD Alfonzo, JA Brown, PH Byers, VG Cheung… - Nature …, 2021 - nature.com
A call for direct sequencing of full-length RNAs to identify all modifications | Nature Genetics
Skip to main content Thank you for visiting nature.com. You are using a browser version …
Skip to main content Thank you for visiting nature.com. You are using a browser version …
Nanopore dwell time analysis permits sequencing and conformational assignment of pseudouridine in SARS-CoV-2
AM Fleming, NJ Mathewson… - ACS central …, 2021 - ACS Publications
Direct RNA sequencing for the epitranscriptomic modification pseudouridine (Ψ), an isomer
of uridine (U), was conducted with a protein nanopore sensor using a helicase brake to …
of uridine (U), was conducted with a protein nanopore sensor using a helicase brake to …
Measuring the tail: Methods for poly (A) tail profiling
A Brouze, PS Krawczyk… - Wiley Interdisciplinary …, 2023 - Wiley Online Library
Abstract The 3′‐end poly (A) tail is an important and potent feature of most mRNA
molecules that affects mRNA fate and translation efficiency. Polyadenylation is a …
molecules that affects mRNA fate and translation efficiency. Polyadenylation is a …
Analysis of RNA modifications by second-and third-generation deep sequencing: 2020 update
Y Motorin, V Marchand - Genes, 2021 - mdpi.com
The precise mapping and quantification of the numerous RNA modifications that are present
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …
Modification mapping by nanopore sequencing
LK White, JR Hesselberth - Frontiers in Genetics, 2022 - frontiersin.org
Next generation sequencing (NGS) has provided biologists with an unprecedented view into
biological processes and their regulation over the past 2 decades, fueling a wave of …
biological processes and their regulation over the past 2 decades, fueling a wave of …
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A-and P-sites
The biological relevance and dynamics of mRNA modifications have been extensively
studied; however, whether rRNA modifications are dynamically regulated, and under which …
studied; however, whether rRNA modifications are dynamically regulated, and under which …
Detecting the epitranscriptome
A Sarkar, W Gasperi, U Begley, S Nevins… - Wiley …, 2021 - Wiley Online Library
RNA modifications and their corresponding epitranscriptomic writer and eraser enzymes
regulate gene expression. Altered RNA modification levels, dysregulated writers, and …
regulate gene expression. Altered RNA modification levels, dysregulated writers, and …