Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
Modern technologies and algorithms for scaffolding assembled genomes
The computational reconstruction of genome sequences from shotgun sequencing data has
been greatly simplified by the advent of sequencing technologies that generate long reads …
been greatly simplified by the advent of sequencing technologies that generate long reads …
A chromosome-scale assembly of the axolotl genome
JJ Smith, N Timoshevskaya, VA Timoshevskiy… - Genome …, 2019 - genome.cshlp.org
The axolotl (Ambystoma mexicanum) provides critical models for studying regeneration,
evolution, and development. However, its large genome (∼ 32 Gb) presents a formidable …
evolution, and development. However, its large genome (∼ 32 Gb) presents a formidable …
The origin of the odorant receptor gene family in insects
The origin of the insect odorant receptor (OR) gene family has been hypothesized to have
coincided with the evolution of terrestriality in insects. Missbach et al.(2014) suggested that …
coincided with the evolution of terrestriality in insects. Missbach et al.(2014) suggested that …
An improved assembly and annotation of the melon (Cucumis melo L.) reference genome
We report an improved assembly (v3. 6.1) of the melon (Cucumis melo L.) genome and a
new genome annotation (v4. 0). The optical mapping approach allowed correcting the order …
new genome annotation (v4. 0). The optical mapping approach allowed correcting the order …
Genome sequencing and functional analysis of a multipurpose medicinal herb Tinospora cordifolia (Giloy)
Abstract Tinospora cordifolia (Willd.) Hook. f. & Thomson, also known as Giloy, is among the
most important medicinal plants that have numerous therapeutic applications in human …
most important medicinal plants that have numerous therapeutic applications in human …
Genome sequencing of Syzygium cumini (jamun) reveals adaptive evolution in secondary metabolism pathways associated with its medicinal properties
Syzygium cumini, also known as jambolan or jamun, is an evergreen tree widely known for
its medicinal properties, fruits, and ornamental value. To understand the genomic and …
its medicinal properties, fruits, and ornamental value. To understand the genomic and …
Characterization of NRPS and PKS genes involved in the biosynthesis of SMs in Alternaria dauci including the phytotoxic polyketide aldaulactone
J Courtial, JJ Helesbeux, H Oudart, S Aligon… - Scientific Reports, 2022 - nature.com
Alternaria dauci is a Dothideomycete fungus, causal agent of carrot leaf blight. As a member
of the Alternaria genus, known to produce a lot of secondary metabolite toxins, A. dauci is …
of the Alternaria genus, known to produce a lot of secondary metabolite toxins, A. dauci is …
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
Background Obtaining complete gene structures is one major goal of genome assembly.
Some gene regions are fragmented in low quality and high-quality assemblies. Therefore …
Some gene regions are fragmented in low quality and high-quality assemblies. Therefore …
Genome sequencing of turmeric provides evolutionary insights into its medicinal properties
Curcuma longa, or turmeric, is traditionally known for its immense medicinal properties and
has diverse therapeutic applications. However, the absence of a reference genome …
has diverse therapeutic applications. However, the absence of a reference genome …