[HTML][HTML] Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases

JR Brown, T Bharucha, J Breuer - Journal of infection, 2018 - Elsevier
Background Current estimates suggest that even in the most resourced settings, the
aetiology of encephalitis is identified in less than half of clinical cases. It is acknowledged …

Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range

L Zhao, K Rosario, M Breitbart, S Duffy - Advances in virus research, 2019 - Elsevier
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …

[HTML][HTML] Torquetenovirus: the human virome from bench to bedside

D Focosi, G Antonelli, M Pistello, F Maggi - Clinical Microbiology and …, 2016 - Elsevier
Torquetenovirus (TTV) is the most abundant component of human virome. Virologists have
long ignored this orphan and highly divergent virus, in part because TTV cannot be cultured …

Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance

X Fernandez-Cassi, N Timoneda… - Science of the Total …, 2018 - Elsevier
The application of next-generation sequencing (NGS) techniques for the identification of
viruses present in urban sewage has not been fully explored. This is partially due to a lack of …

Current impact and future directions of high throughput sequencing in plant virus diagnostics

S Massart, A Olmos, H Jijakli, T Candresse - Virus research, 2014 - Elsevier
The ability to provide a fast, inexpensive and reliable diagnostic for any given viral infection
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …

Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system

SL Salzberg, FP Breitwieser, A Kumar… - Neurology …, 2016 - AAN Enterprises
Objective: To determine the feasibility of next-generation sequencing (NGS) microbiome
approaches in the diagnosis of infectious disorders in brain or spinal cord biopsies in …

Faecal virome of cats in an animal shelter

W Zhang, L Li, X Deng… - Journal of General …, 2014 - microbiologyresearch.org
We describe the metagenomics-derived feline enteric virome in the faeces of 25 cats from a
single shelter in California. More than 90% of the recognizable viral reads were related to …

Deep sequencing: becoming a critical tool in clinical virology

ME Quiñones-Mateu, S Avila, G Reyes-Teran… - Journal of clinical …, 2014 - Elsevier
Population (Sanger) sequencing has been the standard method in basic and clinical DNA
sequencing for almost 40 years; however, next-generation (deep) sequencing …

Exploring the virome of diseased horses

L Li, F Giannitti, J Low, C Keyes… - Journal of General …, 2015 - microbiologyresearch.org
Metagenomics was used to characterize viral genomes in clinical specimens of horses with
various organ-specific diseases of unknown aetiology. A novel parvovirus as well as a …

[HTML][HTML] Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage

TG Phan, D Mori, X Deng, S Rajindrajith, U Ranawaka… - Virology, 2015 - Elsevier
Viruses with small circular ssDNA genomes encoding a replication initiator protein can infect
a wide range of eukaryotic organisms ranging from mammals to fungi. The genomes of two …