[HTML][HTML] Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases
Background Current estimates suggest that even in the most resourced settings, the
aetiology of encephalitis is identified in less than half of clinical cases. It is acknowledged …
aetiology of encephalitis is identified in less than half of clinical cases. It is acknowledged …
Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
[HTML][HTML] Torquetenovirus: the human virome from bench to bedside
Torquetenovirus (TTV) is the most abundant component of human virome. Virologists have
long ignored this orphan and highly divergent virus, in part because TTV cannot be cultured …
long ignored this orphan and highly divergent virus, in part because TTV cannot be cultured …
Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance
X Fernandez-Cassi, N Timoneda… - Science of the Total …, 2018 - Elsevier
The application of next-generation sequencing (NGS) techniques for the identification of
viruses present in urban sewage has not been fully explored. This is partially due to a lack of …
viruses present in urban sewage has not been fully explored. This is partially due to a lack of …
Current impact and future directions of high throughput sequencing in plant virus diagnostics
The ability to provide a fast, inexpensive and reliable diagnostic for any given viral infection
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …
Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system
Objective: To determine the feasibility of next-generation sequencing (NGS) microbiome
approaches in the diagnosis of infectious disorders in brain or spinal cord biopsies in …
approaches in the diagnosis of infectious disorders in brain or spinal cord biopsies in …
Faecal virome of cats in an animal shelter
W Zhang, L Li, X Deng… - Journal of General …, 2014 - microbiologyresearch.org
We describe the metagenomics-derived feline enteric virome in the faeces of 25 cats from a
single shelter in California. More than 90% of the recognizable viral reads were related to …
single shelter in California. More than 90% of the recognizable viral reads were related to …
Deep sequencing: becoming a critical tool in clinical virology
ME Quiñones-Mateu, S Avila, G Reyes-Teran… - Journal of clinical …, 2014 - Elsevier
Population (Sanger) sequencing has been the standard method in basic and clinical DNA
sequencing for almost 40 years; however, next-generation (deep) sequencing …
sequencing for almost 40 years; however, next-generation (deep) sequencing …
Exploring the virome of diseased horses
L Li, F Giannitti, J Low, C Keyes… - Journal of General …, 2015 - microbiologyresearch.org
Metagenomics was used to characterize viral genomes in clinical specimens of horses with
various organ-specific diseases of unknown aetiology. A novel parvovirus as well as a …
various organ-specific diseases of unknown aetiology. A novel parvovirus as well as a …
[HTML][HTML] Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage
Viruses with small circular ssDNA genomes encoding a replication initiator protein can infect
a wide range of eukaryotic organisms ranging from mammals to fungi. The genomes of two …
a wide range of eukaryotic organisms ranging from mammals to fungi. The genomes of two …