Contemporary methods and evidence for species delimitation
DM Hillis, EA Chambers… - Ichthyology & …, 2021 - meridian.allenpress.com
Over the last two decades, mitochondrial DNA (mtDNA) sequence data, as well as analyses
of nuclear DNA based on the multispecies coalescent model, have increasingly been used …
of nuclear DNA based on the multispecies coalescent model, have increasingly been used …
Integrative taxonomy and geographic sampling underlie successful species delimitation
Species delimitation requires a broad assessment of population-level variation using
multiple lines of evidence, a process known as integrative taxonomy. More specifically …
multiple lines of evidence, a process known as integrative taxonomy. More specifically …
Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex
As genomic data proliferates, the prevalence of post-speciation gene flow is making species
boundaries and relationships increasingly ambiguous. Although current approaches …
boundaries and relationships increasingly ambiguous. Although current approaches …
Combining species delimitation, species trees, and tests for gene flow clarifies complex speciation in scrub-jays
Complex speciation, involving rapid divergence and multiple bouts of post-divergence gene
flow, can obfuscate phylogenetic relationships and species limits. In North America, cases of …
flow, can obfuscate phylogenetic relationships and species limits. In North America, cases of …
Limited introgression between rock-wallabies with extensive chromosomal rearrangements
Chromosome rearrangements can result in the rapid evolution of hybrid incompatibilities.
Robertsonian fusions, particularly those with monobrachial homology, can drive …
Robertsonian fusions, particularly those with monobrachial homology, can drive …
Sequence capture from historical museum specimens: maximizing value for population and phylogenomic studies
The application of high-throughput, short-read sequencing to degraded DNA has greatly
increased the feasibility of generating genomic data from historical museum specimens …
increased the feasibility of generating genomic data from historical museum specimens …
Cryptic and extensive hybridization between ancient lineages of American crows
Most species and therefore most hybrid zones have historically been defined using
phenotypic characters. However, both speciation and hybridization can occur with negligible …
phenotypic characters. However, both speciation and hybridization can occur with negligible …
Spatial population genetics in heavily managed species: Separating patterns of historical translocation from contemporary gene flow in white‐tailed deer
Approximately 100 years ago, unregulated harvest nearly eliminated white‐tailed deer
(Odocoileus virginianus) from eastern North America, which subsequently served to catalyze …
(Odocoileus virginianus) from eastern North America, which subsequently served to catalyze …
The Origins of Coca: Museum Genomics Reveals Multiple Independent Domestications from Progenitor Erythroxylum gracilipes
Coca is the natural source of cocaine as well as a sacred and medicinal plant farmed by
South American Amerindians and mestizos. The coca crop comprises four closely related …
South American Amerindians and mestizos. The coca crop comprises four closely related …
Consilience across multiple, independent genomic data sets reveals species in a complex with limited phenotypic variation
Species delimitation in the genomic era has focused predominantly on the application of
multiple analytical methodologies to a single massive parallel sequencing (MPS) data set …
multiple analytical methodologies to a single massive parallel sequencing (MPS) data set …