Contemporary methods and evidence for species delimitation

DM Hillis, EA Chambers… - Ichthyology & …, 2021 - meridian.allenpress.com
Over the last two decades, mitochondrial DNA (mtDNA) sequence data, as well as analyses
of nuclear DNA based on the multispecies coalescent model, have increasingly been used …

Integrative taxonomy and geographic sampling underlie successful species delimitation

C Cicero, NA Mason, RA Jiménez, DR Wait… - The Auk, 2021 - academic.oup.com
Species delimitation requires a broad assessment of population-level variation using
multiple lines of evidence, a process known as integrative taxonomy. More specifically …

Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex

M San Jose, C Doorenweerd, S Geib, N Barr… - Molecular Phylogenetics …, 2023 - Elsevier
As genomic data proliferates, the prevalence of post-speciation gene flow is making species
boundaries and relationships increasingly ambiguous. Although current approaches …

Combining species delimitation, species trees, and tests for gene flow clarifies complex speciation in scrub-jays

DA DeRaad, JE McCormack, N Chen… - Systematic …, 2022 - academic.oup.com
Complex speciation, involving rapid divergence and multiple bouts of post-divergence gene
flow, can obfuscate phylogenetic relationships and species limits. In North America, cases of …

Limited introgression between rock-wallabies with extensive chromosomal rearrangements

S Potter, JG Bragg, R Turakulov… - Molecular Biology …, 2022 - academic.oup.com
Chromosome rearrangements can result in the rapid evolution of hybrid incompatibilities.
Robertsonian fusions, particularly those with monobrachial homology, can drive …

Sequence capture from historical museum specimens: maximizing value for population and phylogenomic studies

E Roycroft, C Moritz, KC Rowe, A Moussalli… - Frontiers in Ecology …, 2022 - frontiersin.org
The application of high-throughput, short-read sequencing to degraded DNA has greatly
increased the feasibility of generating genomic data from historical museum specimens …

Cryptic and extensive hybridization between ancient lineages of American crows

DL Slager, KL Epperly, RR Ha, S Rohwer… - Molecular …, 2020 - Wiley Online Library
Most species and therefore most hybrid zones have historically been defined using
phenotypic characters. However, both speciation and hybridization can occur with negligible …

Spatial population genetics in heavily managed species: Separating patterns of historical translocation from contemporary gene flow in white‐tailed deer

TK Chafin, ZD Zbinden, MR Douglas… - Evolutionary …, 2021 - Wiley Online Library
Approximately 100 years ago, unregulated harvest nearly eliminated white‐tailed deer
(Odocoileus virginianus) from eastern North America, which subsequently served to catalyze …

The Origins of Coca: Museum Genomics Reveals Multiple Independent Domestications from Progenitor Erythroxylum gracilipes

DM White, JP Huang, OA Jara-Muñoz… - Systematic …, 2021 - academic.oup.com
Coca is the natural source of cocaine as well as a sacred and medicinal plant farmed by
South American Amerindians and mestizos. The coca crop comprises four closely related …

Consilience across multiple, independent genomic data sets reveals species in a complex with limited phenotypic variation

LM Wootton, F Forest, GA Verboom - Systematic Biology, 2023 - academic.oup.com
Species delimitation in the genomic era has focused predominantly on the application of
multiple analytical methodologies to a single massive parallel sequencing (MPS) data set …