[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data

C Yang, D Chowdhury, Z Zhang, WK Cheung… - Computational and …, 2021 - Elsevier
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …

Exploring protein-protein interactions at the proteome level

H Elhabashy, F Merino, V Alva, O Kohlbacher… - Structure, 2022 - cell.com
Proteins are central to all of the processes of life. For their activity, they almost invariably
need to interact with other macromolecules, be they nucleic acids, membranes, glycans, or …

A widespread toxin− antitoxin system exploiting growth control via alarmone signaling

S Jimmy, CK Saha, T Kurata… - Proceedings of the …, 2020 - National Acad Sciences
Under stressful conditions, bacterial RelA-SpoT Homolog (RSH) enzymes synthesize the
alarmone (p) ppGpp, a nucleotide second messenger.(p) ppGpp rewires bacterial …

Expanding Diversity of Firmicutes Single-Strand Annealing Proteins: A Putative Role of Bacteriophage-Host Arms Race

K Steczkiewicz, E Prestel, E Bidnenko… - Frontiers in …, 2021 - frontiersin.org
Bacteriophage-encoded single strand annealing proteins (SSAPs) are recombinases which
can substitute the classical, bacterial RecA and manage the DNA metabolism at different …

Unveiling the role of emerging metagenomics for the examination of hypersaline environments

K Dindhoria, V Manyapu, A Ali… - … and Genetic Engineering …, 2024 - Taylor & Francis
Hypersaline ecosystems are distributed all over the globe. They are subjected to poly-
extreme stresses and are inhabited by halophilic microorganisms possessing multiple …

[PDF][PDF] Discovery of small alarmone synthetases and their inhibitors as toxin-antitoxin loci

S Jimmy, CK Saha, C Stavropoulos… - …, 2019 - pdfs.semanticscholar.org
Under stressful conditions, bacterial RelA-SpoT Homologue (RSH) enzymes synthesise the
alarmone (p) ppGpp, a nucleotide messenger.(p) ppGpp rewires bacterial transcription and …