The molecular principles of gene regulation by Polycomb repressive complexes

NP Blackledge, RJ Klose - Nature reviews Molecular cell biology, 2021 - nature.com
Precise control of gene expression is fundamental to cell function and development.
Although ultimately gene expression relies on DNA-binding transcription factors to guide the …

[HTML][HTML] Looping back to leap forward: transcription enters a new era

M Levine, C Cattoglio, R Tjian - Cell, 2014 - cell.com
Comparative genome analyses reveal that organismal complexity scales not with gene
number but with gene regulation. Recent efforts indicate that the human genome likely …

[HTML][HTML] Mechanism of transcriptional bursting in bacteria

S Chong, C Chen, H Ge, XS Xie - Cell, 2014 - cell.com
Transcription of highly expressed genes has been shown to occur in stochastic bursts. But
the origin of such ubiquitous phenomenon has not been understood. Here, we present the …

[HTML][HTML] Single-cell measurement of plasmid copy number and promoter activity

B Shao, J Rammohan, DA Anderson… - Nature …, 2021 - nature.com
Accurate measurements of promoter activities are crucial for predictably building genetic
systems. Here we report a method to simultaneously count plasmid DNA, RNA transcripts …

[HTML][HTML] Single-molecule studies of origin licensing reveal mechanisms ensuring bidirectional helicase loading

S Ticau, LJ Friedman, NA Ivica, J Gelles, SP Bell - Cell, 2015 - cell.com
Loading of the ring-shaped Mcm2–7 replicative helicase around DNA licenses eukaryotic
origins of replication. During loading, Cdc6, Cdt1, and the origin-recognition complex (ORC) …

The Role of Bacterial Enhancer Binding Proteins as Specialized Activators of σ54-Dependent Transcription

M Bush, R Dixon - Microbiology and Molecular Biology Reviews, 2012 - Am Soc Microbiol
Bacterial enhancer binding proteins (bEBPs) are transcriptional activators that assemble as
hexameric rings in their active forms and utilize ATP hydrolysis to remodel the conformation …

[HTML][HTML] Initial events in bacterial transcription initiation

EF Ruff, MT Record Jr, I Artsimovitch - Biomolecules, 2015 - mdpi.com
Transcription initiation is a highly regulated step of gene expression. Here, we discuss the
series of large conformational changes set in motion by initial specific binding of bacterial …

Molecular crowding shapes gene expression in synthetic cellular nanosystems

C Tan, S Saurabh, MP Bruchez, R Schwartz… - Nature …, 2013 - nature.com
The integration of synthetic and cell-free biology has made tremendous strides towards
creating artificial cellular nanosystems using concepts from solution-based chemistry, where …

Head-on and co-directional RNA polymerase collisions orchestrate bidirectional transcription termination

L Wang, JW Watters, X Ju, G Lu, S Liu - Molecular cell, 2023 - cell.com
Genomic DNA is a crowded track where motor proteins frequently collide. It remains
underexplored whether these collisions carry physiological function. In this work, we …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …