[HTML][HTML] Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
J Lloyd-Price, C Arze, AN Ananthakrishnan… - Nature, 2019 - nature.com
Inflammatory bowel diseases, which include Crohn's disease and ulcerative colitis, affect
several million individuals worldwide. Crohn's disease and ulcerative colitis are complex …
several million individuals worldwide. Crohn's disease and ulcerative colitis are complex …
Enterotypes in the landscape of gut microbial community composition
Population stratification is a useful approach for a better understanding of complex
biological problems in human health and wellbeing. The proposal that such stratification …
biological problems in human health and wellbeing. The proposal that such stratification …
Recovery of gut microbiota of healthy adults following antibiotic exposure
To minimize the impact of antibiotics, gut microorganisms harbour and exchange antibiotics
resistance genes, collectively called their resistome. Using shotgun sequencing-based …
resistance genes, collectively called their resistome. Using shotgun sequencing-based …
The human gut microbiome: from association to modulation
Our understanding of the human gut microbiome continues to evolve at a rapid pace, but
practical application of thisknowledge is still in its infancy. This review discusses the type of …
practical application of thisknowledge is still in its infancy. This review discusses the type of …
Towards standards for human fecal sample processing in metagenomic studies
Technical variation in metagenomic analysis must be minimized to confidently assess the
contributions of microbiota to human health. Here we tested 21 representative DNA …
contributions of microbiota to human health. Here we tested 21 representative DNA …
Extensive transmission of microbes along the gastrointestinal tract
The gastrointestinal tract is abundantly colonized by microbes, yet the translocation of oral
species to the intestine is considered a rare aberrant event, and a hallmark of disease. By …
species to the intestine is considered a rare aberrant event, and a hallmark of disease. By …
Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries
Diet impacts human health, influencing body adiposity and the risk of developing
cardiometabolic diseases. The gut microbiome is a key player in the diet-health axis, but …
cardiometabolic diseases. The gut microbiome is a key player in the diet-health axis, but …
Microbial abundance, activity and population genomic profiling with mOTUs2
Metagenomic sequencing has greatly improved our ability to profile the composition of
environmental and host-associated microbial communities. However, the dependency of …
environmental and host-associated microbial communities. However, the dependency of …
[HTML][HTML] Establishing what constitutes a healthy human gut microbiome: state of the science, regulatory considerations, and future directions
MI McBurney, C Davis, CM Fraser, BO Schneeman… - The Journal of …, 2019 - Elsevier
ABSTRACT On December 17, 2018, the North American branch of the International Life
Sciences Institute (ILSI North America) convened a workshop “Can We Begin to Define a …
Sciences Institute (ILSI North America) convened a workshop “Can We Begin to Define a …
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Fecal microbiota transplantation (FMT) has shown efficacy in treating recurrent Clostridium
difficile infection and is increasingly being applied to other gastrointestinal disorders, yet the …
difficile infection and is increasingly being applied to other gastrointestinal disorders, yet the …