Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation
EJM Koenen, C Kidner, ÉR de Souza… - American Journal of …, 2020 - Wiley Online Library
PREMISE Targeted enrichment methods facilitate sequencing of hundreds of nuclear loci to
enhance phylogenetic resolution and elucidate why some parts of the “tree of life” are …
enhance phylogenetic resolution and elucidate why some parts of the “tree of life” are …
Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis)
In cryptic amphibian complexes, there is a growing trend to equate high levels of genetic
structure with hidden cryptic species diversity. Typically, phylogenetic structure and distance …
structure with hidden cryptic species diversity. Typically, phylogenetic structure and distance …
[HTML][HTML] How to Tackle Phylogenetic Discordance in Recent and Rapidly Radiating Groups? Developing a Workflow Using Loricaria (Asteraceae) as an Example
A major challenge in phylogenetics and-genomics is to resolve young rapidly radiating
groups. The fast succession of species increases the probability of incomplete lineage …
groups. The fast succession of species increases the probability of incomplete lineage …
Discovering fragile clades and causal sequences in phylogenomics by evolutionary sparse learning
S Sharma, S Kumar - Molecular Biology and Evolution, 2024 - academic.oup.com
Phylogenomic analyses of long sequences, consisting of many genes and genomic
segments, infer organismal relationships with high statistical confidence. But, these …
segments, infer organismal relationships with high statistical confidence. But, these …
Concordance-based approaches for the inference of relationships and molecular rates with phylogenomic data sets
Gene tree conflict is common and finding methods to analyze and alleviate the negative
effects that conflict has on species tree analysis is a crucial part of phylogenomics. This …
effects that conflict has on species tree analysis is a crucial part of phylogenomics. This …
On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the relationships of the waterlilies
The waterlily clade represents the second earliestdiverging branch of angiosperms. Most
of its species belong to Nymphaeaceae, of which the “core Nymphaeaceae”—comprising …
of its species belong to Nymphaeaceae, of which the “core Nymphaeaceae”—comprising …
Afro-alpine flagships revisited II: elucidating the evolutionary relationships and species boundaries in the giant senecios (Dendrosenecio, Asteraceae)
Alpine plant radiations are common across all major mountain systems of the world, and
have been regarded as the main explanation for the species diversity found within these …
have been regarded as the main explanation for the species diversity found within these …
[图书][B] Big Data Phylogenomics: Methods and Applications
S Sharma - 2023 - search.proquest.com
Phylogenomics, the study of genome-scale data containing many genes and species, has
advanced our understanding of patterns of evolutionary relationships and processes …
advanced our understanding of patterns of evolutionary relationships and processes …