[HTML][HTML] Recent advances and applications of deep learning methods in materials science

K Choudhary, B DeCost, C Chen, A Jain… - npj Computational …, 2022 - nature.com
Deep learning (DL) is one of the fastest-growing topics in materials data science, with
rapidly emerging applications spanning atomistic, image-based, spectral, and textual data …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

Learning subpocket prototypes for generalizable structure-based drug design

Z Zhang, Q Liu - International Conference on Machine …, 2023 - proceedings.mlr.press
Generating molecules with high binding affinities to target proteins (aka structure-based
drug design) is a fundamental and challenging task in drug discovery. Recently, deep …

Fragment‐based drug discovery—the importance of high‐quality molecule libraries

M Bon, A Bilsland, J Bower, K McAulay - Molecular Oncology, 2022 - Wiley Online Library
Fragment‐based drug discovery (FBDD) is now established as a complementary approach
to high‐throughput screening (HTS). Contrary to HTS, where large libraries of drug‐like …

[HTML][HTML] Deep generative design with 3D pharmacophoric constraints

F Imrie, TE Hadfield, AR Bradley, CM Deane - Chemical science, 2021 - pubs.rsc.org
Generative models have increasingly been proposed as a solution to the molecular design
problem. However, it has proved challenging to control the design process or incorporate …

Molecule generation for target protein binding with structural motifs

Z Zhang, Y Min, S Zheng, Q Liu - The Eleventh International …, 2022 - openreview.net
Designing ligand molecules that bind to specific protein binding sites is a fundamental
problem in structure-based drug design. Although deep generative models and geometric …

Zero-shot 3d drug design by sketching and generating

S Long, Y Zhou, X Dai, H Zhou - Advances in Neural …, 2022 - proceedings.neurips.cc
Drug design is a crucial step in the drug discovery cycle. Recently, various deep learning-
based methods design drugs by generating novel molecules from scratch, avoiding …

[HTML][HTML] 3D molecular generative framework for interaction-guided drug design

W Zhung, H Kim, WY Kim - Nature Communications, 2024 - nature.com
Deep generative modeling has a strong potential to accelerate drug design. However,
existing generative models often face challenges in generalization due to limited data …

Functional-group-based diffusion for pocket-specific molecule generation and elaboration

H Lin, Y Huang, O Zhang, Y Liu, L Wu… - Advances in …, 2024 - proceedings.neurips.cc
In recent years, AI-assisted drug design methods have been proposed to generate
molecules given the pockets' structures of target proteins. Most of them are {\em atom-level …

ACFIS 2.0: an improved web-server for fragment-based drug discovery via a dynamic screening strategy

XX Shi, ZZ Wang, F Wang, GF Hao… - Nucleic Acids …, 2023 - academic.oup.com
Drug discovery, which plays a vital role in maintaining human health, is a persistent
challenge. Fragment-based drug discovery (FBDD) is one of the strategies for the discovery …