T cells in health and disease

L Sun, Y Su, A Jiao, X Wang, B Zhang - Signal transduction and …, 2023 - nature.com
T cells are crucial for immune functions to maintain health and prevent disease. T cell
development occurs in a stepwise process in the thymus and mainly generates CD4+ and …

Signal pathways of melanoma and targeted therapy

W Guo, H Wang, C Li - Signal transduction and targeted therapy, 2021 - nature.com
Melanoma is the most lethal skin cancer that originates from the malignant transformation of
melanocytes. Although melanoma has long been regarded as a cancerous malignancy with …

Profiling tumor infiltrating immune cells with CIBERSORT

B Chen, MS Khodadoust, CL Liu, AM Newman… - Cancer Systems Biology …, 2018 - Springer
Tumor infiltrating leukocytes (TILs) are an integral component of the tumor microenvironment
and have been found to correlate with prognosis and response to therapy. Methods to …

Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance

F Newell, IP da Silva, PA Johansson, AM Menzies… - Cancer cell, 2022 - cell.com
We concurrently examine the whole genome, transcriptome, methylome, and immune cell
infiltrates in baseline tumors from 77 patients with advanced cutaneous melanoma treated …

Genomic classification of cutaneous melanoma

R Akbani, KC Akdemir, B áArman Aksoy, M Albert… - Cell, 2015 - cell.com
We describe the landscape of genomic alterations in cutaneous melanomas through DNA,
RNA, and protein-based analysis of 333 primary and/or metastatic melanomas from 331 …

The continuum of cancer immunosurveillance: prognostic, predictive, and mechanistic signatures

J Galon, HK Angell, D Bedognetti, FM Marincola - Immunity, 2013 - cell.com
Numerous analyses of large patient cohorts identified specific patterns of immune activation
associated with patient survival. We established these as the immune contexture …

BRAF inhibitor resistance mechanisms in metastatic melanoma: spectrum and clinical impact

H Rizos, AM Menzies, GM Pupo, MS Carlino… - Clinical cancer …, 2014 - AACR
Purpose: Multiple BRAF inhibitor resistance mechanisms have been described, however,
their relative frequency, clinical correlates, and effect on subsequent therapy have not been …

Increased MAPK reactivation in early resistance to dabrafenib/trametinib combination therapy of BRAF-mutant metastatic melanoma

GV Long, C Fung, AM Menzies, GM Pupo… - Nature …, 2014 - nature.com
One-third of BRAF-mutant metastatic melanoma patients treated with combined BRAF and
MEK inhibition progress within 6 months. Treatment options for these patients remain …

Immune cell gene signatures for profiling the microenvironment of solid tumors

AJ Nirmal, T Regan, BB Shih, DA Hume, AH Sims… - Cancer immunology …, 2018 - AACR
The immune composition of the tumor microenvironment regulates processes including
angiogenesis, metastasis, and the response to drugs or immunotherapy. To facilitate the …

TERT Promoter Mutation Status as an Independent Prognostic Factor in Cutaneous Melanoma

KG Griewank, R Murali, JA Puig-Butille… - Journal of the …, 2014 - academic.oup.com
Background Recently, TERT promoter mutations were identified at high frequencies in
cutaneous melanoma tumor samples and cell lines. The mutations were found to have a UV …