Illuminating the dark phosphoproteome
Protein phosphorylation is a major regulator of protein function and biological outcomes.
This was first recognized through functional biochemical experiments, and in the past …
This was first recognized through functional biochemical experiments, and in the past …
Protein analysis by shotgun/bottom-up proteomics
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
Cyclic immonium ion of lactyllysine reveals widespread lactylation in the human proteome
N Wan, N Wang, S Yu, H Zhang, S Tang, D Wang… - Nature …, 2022 - nature.com
Lactylation was initially discovered on human histones. Given its nascence, its occurrence
on nonhistone proteins and downstream functional consequences remain elusive. Here we …
on nonhistone proteins and downstream functional consequences remain elusive. Here we …
MS-GF+ makes progress towards a universal database search tool for proteomics
S Kim, PA Pevzner - Nature communications, 2014 - nature.com
Mass spectrometry (MS) instruments and experimental protocols are rapidly advancing, but
the software tools to analyse tandem mass spectra are lagging behind. We present a …
the software tools to analyse tandem mass spectra are lagging behind. We present a …
Next-generation proteomics: towards an integrative view of proteome dynamics
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …
disease states. However, the causes of most disorders are multifactorial, and systems-level …
[HTML][HTML] Wnt signaling through inhibition of β-catenin degradation in an intact Axin1 complex
Degradation of cytosolic β-catenin by the APC/Axin1 destruction complex represents the key
regulated step of the Wnt pathway. It is incompletely understood how the Axin1 complex …
regulated step of the Wnt pathway. It is incompletely understood how the Axin1 complex …
Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling
The adult stem cell marker Lgr5 and its relative Lgr4 are often co-expressed in Wnt-driven
proliferative compartments. We find that conditional deletion of both genes in the mouse gut …
proliferative compartments. We find that conditional deletion of both genes in the mouse gut …
Proteomics beyond trypsin
L Tsiatsiani, AJR Heck - The FEBS journal, 2015 - Wiley Online Library
Peptide‐centered shotgun analysis of proteins has been the core technology in mass
spectrometry based proteomics and has enabled numerous biological discoveries, such as …
spectrometry based proteomics and has enabled numerous biological discoveries, such as …
The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+ 4'cell markers
Two types of stem cells are currently defined in small intestinal crypts: cycling crypt base
columnar (CBC) cells and quiescent '+ 4'cells. Here, we combine transcriptomics with …
columnar (CBC) cells and quiescent '+ 4'cells. Here, we combine transcriptomics with …
Toward a comprehensive characterization of a human cancer cell phosphoproteome
H Zhou, S Di Palma, C Preisinger, M Peng… - Journal of proteome …, 2013 - ACS Publications
Mass spectrometry (MS)-based phosphoproteomics has achieved extraordinary success in
qualitative and quantitative analysis of cellular protein phosphorylation. Considering that an …
qualitative and quantitative analysis of cellular protein phosphorylation. Considering that an …