Horizontal gene transfer among host-associated microbes
Horizontal gene transfer is an important evolutionary force, facilitating bacterial diversity. It is
thought to be pervasive in host-associated microbiomes, where bacterial densities are high …
thought to be pervasive in host-associated microbiomes, where bacterial densities are high …
Sequencing-based analysis of microbiomes
Microbiomes occupy a range of niches and, in addition to having diverse compositions, they
have varied functional roles that have an impact on agriculture, environmental sciences, and …
have varied functional roles that have an impact on agriculture, environmental sciences, and …
Rapid and sensitive detection of genome contamination at scale with FCS-GX
A Astashyn, ES Tvedte, D Sweeney, V Sapojnikov… - Genome biology, 2024 - Springer
Assembled genome sequences are being generated at an exponential rate. Here we
present FCS-GX, part of NCBI's Foreign Contamination Screen (FCS) tool suite, optimized to …
present FCS-GX, part of NCBI's Foreign Contamination Screen (FCS) tool suite, optimized to …
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly
dependent on the availability of well-annotated genomes. As the number of publicly …
dependent on the availability of well-annotated genomes. As the number of publicly …
Positive and negative effects of recirculating aquaculture water advanced oxidation: O3 and O3/UV treatments improved water quality but increased antibiotic …
W Xue, C Zhang, D Zhou - Water Research, 2023 - Elsevier
Recirculating aquaculture systems (RASs) can be efficiently used for aquaculture, and
oxidation treatment is commonly used to improve water quality. However, the effects of …
oxidation treatment is commonly used to improve water quality. However, the effects of …
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis
Streptococcus dysgalactiae subsp. equisimilis (SDSE) is an emerging cause of human
infection with invasive disease incidence and clinical manifestations comparable to the …
infection with invasive disease incidence and clinical manifestations comparable to the …
The evolution of antibiotic resistance islands occurs within the framework of plasmid lineages
Bacterial pathogens carrying multidrug resistance (MDR) plasmids are a major threat to
human health. The acquisition of antibiotic resistance genes (ARGs) in plasmids is often …
human health. The acquisition of antibiotic resistance genes (ARGs) in plasmids is often …
Viral communities contribute more to the lysis of antibiotic-resistant bacteria than the transduction of antibiotic resistance genes in anaerobic digestion revealed by …
Ecological role of the viral community on the fate of antibiotic resistance genes
(ARGs)(reduction vs proliferation) remains unclear in anaerobic digestion (AD) …
(ARGs)(reduction vs proliferation) remains unclear in anaerobic digestion (AD) …
Antimicrobial resistance in Romania: updates on gram-negative ESCAPE pathogens in the clinical, veterinary, and aquatic sectors
Multidrug-resistant Gram-negative bacteria such as Acinetobacter baumannii,
Pseudomonas aeruginosa, and members of the Enterobacterales order are a challenging …
Pseudomonas aeruginosa, and members of the Enterobacterales order are a challenging …
[HTML][HTML] Promising bioprocesses for the efficient removal of antibiotics and antibiotic-resistance genes from urban and hospital wastewaters: Potentialities of aerobic …
L Perez-Bou, A Gonzalez-Martinez… - Environmental …, 2023 - Elsevier
The use, overuse, and improper use of antibiotics have resulted in higher levels of antibiotic-
resistant bacteria (ARB) and antibiotic-resistance genes (ARGs), which have profoundly …
resistant bacteria (ARB) and antibiotic-resistance genes (ARGs), which have profoundly …