The role of retrotransposable elements in ageing and age-associated diseases

V Gorbunova, A Seluanov, P Mita, W McKerrow… - Nature, 2021 - nature.com
The genomes of virtually all organisms contain repetitive sequences that are generated by
the activity of transposable elements (transposons). Transposons are mobile genetic …

Epigenetic clock: A promising biomarker and practical tool in aging

R Duan, Q Fu, Y Sun, Q Li - Ageing Research Reviews, 2022 - Elsevier
As a complicated process, aging is characterized by various changes at the cellular,
subcellular and nuclear levels, one of which is epigenetic aging. With increasing awareness …

[HTML][HTML] Hypoxia and brain aging: Neurodegeneration or neuroprotection?

J Burtscher, RT Mallet, M Burtscher, GP Millet - Ageing research reviews, 2021 - Elsevier
The absolute reliance of the mammalian brain on oxygen to generate ATP renders it acutely
vulnerable to hypoxia, whether at high altitude or in clinical settings of anemia or pulmonary …

Distinct longevity mechanisms across and within species and their association with aging

A Tyshkovskiy, S Ma, AV Shindyapina, S Tikhonov… - Cell, 2023 - cell.com
Lifespan varies within and across species, but the general principles of its control remain
unclear. Here, we conducted multi-tissue RNA-seq analyses across 41 mammalian species …

Origins and evolution of extreme life span in Pacific Ocean rockfishes

SRR Kolora, GL Owens, JM Vazquez, A Stubbs… - Science, 2021 - science.org
Pacific Ocean rockfishes (genus Sebastes) exhibit extreme variation in life span, with some
species being among the most long-lived extant vertebrates. We de novo assembled the …

[HTML][HTML] Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

T Zhang, Y Hu, W Jiang, L Fang, X Guan, J Chen… - Nature …, 2015 - nature.com
Upland cotton is a model for polyploid crop domestication and transgenic improvement.
Here we sequenced the allotetraploid Gossypium hirsutum L. acc. TM-1 genome by …

Evolution by gene loss

R Albalat, C Cañestro - Nature Reviews Genetics, 2016 - nature.com
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …

[HTML][HTML] The hallmarks of aging

C López-Otín, MA Blasco, L Partridge, M Serrano… - Cell, 2013 - cell.com
Aging is characterized by a progressive loss of physiological integrity, leading to impaired
function and increased vulnerability to death. This deterioration is the primary risk factor for …

[HTML][HTML] Enhancer evolution across 20 mammalian species

D Villar, C Berthelot, S Aldridge, TF Rayner, M Lukk… - Cell, 2015 - cell.com
The mammalian radiation has corresponded with rapid changes in noncoding regions of the
genome, but we lack a comprehensive understanding of regulatory evolution in mammals …

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

R Kajitani, K Toshimoto, H Noguchi, A Toyoda… - Genome …, 2014 - genome.cshlp.org
Although many de novo genome assembly projects have recently been conducted using
high-throughput sequencers, assembling highly heterozygous diploid genomes is a …