RNA polymerase II speed: a key player in controlling and adapting transcriptome composition
L Muniz, E Nicolas, D Trouche - The EMBO journal, 2021 - embopress.org
Abstract RNA polymerase II (RNA Pol II) speed or elongation rate, ie, the number of
nucleotides synthesized per unit of time, is a major determinant of transcriptome …
nucleotides synthesized per unit of time, is a major determinant of transcriptome …
'Multi-omics' data integration: applications in probiotics studies
The concept of probiotics is witnessing increasing attention due to its benefits in influencing
the host microbiome and the modulation of host immunity through the strengthening of the …
the host microbiome and the modulation of host immunity through the strengthening of the …
Spatial epitranscriptomics reveals A-to-I editome specific to cancer stem cell microniches
Epitranscriptomic features, such as single-base RNA editing, are sources of transcript
diversity in cancer, but little is understood in terms of their spatial context in the tumour …
diversity in cancer, but little is understood in terms of their spatial context in the tumour …
Intricacies of single-cell multi-omics data integration
A wealth of single-cell protocols makes it possible to characterize different molecular layers
at unprecedented resolution. Integrating the resulting multimodal single-cell data to find cell …
at unprecedented resolution. Integrating the resulting multimodal single-cell data to find cell …
Comprehensive mapping of alternative polyadenylation site usage and its dynamics at single-cell resolution
J Wang, W Chen, W Yue, W Hou… - Proceedings of the …, 2022 - National Acad Sciences
Alternative polyadenylation (APA) plays an important role in posttranscriptional gene
regulation such as transcript stability and translation efficiency. However, our knowledge …
regulation such as transcript stability and translation efficiency. However, our knowledge …
Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing
CU Yuan, FX Quah, M Hemberg - Molecular Aspects of Medicine, 2024 - Elsevier
Single-cell technologies have transformed biomedical research over the last decade,
opening up new possibilities for understanding cellular heterogeneity, both at the genomic …
opening up new possibilities for understanding cellular heterogeneity, both at the genomic …
The glycopatterns of Pseudomonas aeruginosa as a potential biomarker for its carbapenem resistance
J Dang, J Shu, R Wang, H Yu, Z Chen… - Microbiology …, 2023 - Am Soc Microbiol
Multidrug-resistant (MDR) Pseudomonas aeruginosa infections pose a significant challenge
to effective treatment. Although carbapenems were once considered the primary therapeutic …
to effective treatment. Although carbapenems were once considered the primary therapeutic …
[HTML][HTML] Single-cell molecular barcoding to decode multimodal information defining cell states
IS Kim - Molecules and cells, 2023 - Elsevier
Single-cell research has provided a breakthrough in biology to understand heterogeneous
cell groups, such as tissues and organs, in development and disease. Molecular barcoding …
cell groups, such as tissues and organs, in development and disease. Molecular barcoding …
CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5'scRNA-seq data
Five-prime single-cell RNA-seq (scRNA-seq) has been widely employed to profile cellular
transcriptomes, however, its power of analysing transcription start sites (TSS) has not been …
transcriptomes, however, its power of analysing transcription start sites (TSS) has not been …
MOJITOO: a fast and universal method for integration of multimodal single-cell data
Motivation The advent of multi-modal single-cell sequencing techniques have shed new
light on molecular mechanisms by simultaneously inspecting transcriptomes, epigenomes …
light on molecular mechanisms by simultaneously inspecting transcriptomes, epigenomes …