Customizing cellular signal processing by synthetic multi-level regulatory circuits
As synthetic biology permeates society, the signal processing circuits in engineered living
systems must be customized to meet practical demands. Towards this mission, novel …
systems must be customized to meet practical demands. Towards this mission, novel …
Genetic switches based on nucleic acid strand displacement
T Wang, H Hellmer, FC Simmel - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•Toehold-mediated strand displacement processes are increasingly utilized in
vivo.•Toehold switches enable control of gene expression in vivo and applications in …
vivo.•Toehold switches enable control of gene expression in vivo and applications in …
Cotranscriptionally encoded RNA strand displacement circuits
SW Schaffter, EA Strychalski - Science Advances, 2022 - science.org
Engineered molecular circuits that process information in biological systems could address
emerging human health and biomanufacturing needs. However, such circuits can be difficult …
emerging human health and biomanufacturing needs. However, such circuits can be difficult …
Programmable synthetic biology tools for developing microbial cell factories
Highlights•Outperforming microbial cell factories requires elaborate and programmable
devices.•Biosensors are engineered for dynamic control with various input signals.•CRISPR …
devices.•Biosensors are engineered for dynamic control with various input signals.•CRISPR …
Bifunctional optogenetic switch for improving shikimic acid production in E. coli
Background Biomass formation and product synthesis decoupling have been proven to be
promising to increase the titer of desired value add products. Optogenetics provides a …
promising to increase the titer of desired value add products. Optogenetics provides a …
Polyphenolic Nanoparticle Platforms (PARCELs) for In Vitro and In Vivo mRNA Delivery
Despite their successful implementation in the COVID-19 vaccines, lipid nanoparticles
(LNPs) still face a central limitation in the delivery of mRNA payloads: endosomal trapping …
(LNPs) still face a central limitation in the delivery of mRNA payloads: endosomal trapping …
Nucleic acid strand displacement–from DNA nanotechnology to translational regulation
FC Simmel - RNA biology, 2023 - Taylor & Francis
Nucleic acid strand displacement reactions involve the competition of two or more DNA or
RNA strands of similar sequence for binding to a complementary strand, and facilitate the …
RNA strands of similar sequence for binding to a complementary strand, and facilitate the …
Data-driven learning of structure augments quantitative prediction of biological responses
Multi-factor screenings are commonly used in diverse applications in medicine and
bioengineering, including optimizing combination drug treatments and microbiome …
bioengineering, including optimizing combination drug treatments and microbiome …
Design approaches to expand the toolkit for building cotranscriptionally encoded RNA strand displacement circuits
SW Schaffter, ME Wintenberg, TM Murphy… - ACS Synthetic …, 2023 - ACS Publications
Cotranscriptionally encoded RNA strand displacement (ctRSD) circuits are an emerging tool
for programmable molecular computation, with potential applications spanning in vitro …
for programmable molecular computation, with potential applications spanning in vitro …
Engineering an Escherichia coli based in vivo mRNA manufacturing platform
Synthetic mRNA is currently produced in standardized in vitro transcription systems.
However, this one‐size‐fits‐all approach has associated drawbacks in supply chain …
However, this one‐size‐fits‐all approach has associated drawbacks in supply chain …