Customizing cellular signal processing by synthetic multi-level regulatory circuits

Y Gao, L Wang, B Wang - Nature Communications, 2023 - nature.com
As synthetic biology permeates society, the signal processing circuits in engineered living
systems must be customized to meet practical demands. Towards this mission, novel …

Genetic switches based on nucleic acid strand displacement

T Wang, H Hellmer, FC Simmel - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•Toehold-mediated strand displacement processes are increasingly utilized in
vivo.•Toehold switches enable control of gene expression in vivo and applications in …

Cotranscriptionally encoded RNA strand displacement circuits

SW Schaffter, EA Strychalski - Science Advances, 2022 - science.org
Engineered molecular circuits that process information in biological systems could address
emerging human health and biomanufacturing needs. However, such circuits can be difficult …

Programmable synthetic biology tools for developing microbial cell factories

YH Han, G Kim, SW Seo - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•Outperforming microbial cell factories requires elaborate and programmable
devices.•Biosensors are engineered for dynamic control with various input signals.•CRISPR …

Bifunctional optogenetic switch for improving shikimic acid production in E. coli

I Komera, C Gao, L Guo, G Hu, X Chen… - Biotechnology for Biofuels …, 2022 - Springer
Background Biomass formation and product synthesis decoupling have been proven to be
promising to increase the titer of desired value add products. Optogenetics provides a …

Polyphenolic Nanoparticle Platforms (PARCELs) for In Vitro and In Vivo mRNA Delivery

Y Ma, PB Tiwade, R VanKeulen-Miller… - Nano Letters, 2024 - ACS Publications
Despite their successful implementation in the COVID-19 vaccines, lipid nanoparticles
(LNPs) still face a central limitation in the delivery of mRNA payloads: endosomal trapping …

Nucleic acid strand displacement–from DNA nanotechnology to translational regulation

FC Simmel - RNA biology, 2023 - Taylor & Francis
Nucleic acid strand displacement reactions involve the competition of two or more DNA or
RNA strands of similar sequence for binding to a complementary strand, and facilitate the …

Data-driven learning of structure augments quantitative prediction of biological responses

Y Ha, HR Ma, F Wu, A Weiss, K Duncker… - PLOS Computational …, 2024 - journals.plos.org
Multi-factor screenings are commonly used in diverse applications in medicine and
bioengineering, including optimizing combination drug treatments and microbiome …

Design approaches to expand the toolkit for building cotranscriptionally encoded RNA strand displacement circuits

SW Schaffter, ME Wintenberg, TM Murphy… - ACS Synthetic …, 2023 - ACS Publications
Cotranscriptionally encoded RNA strand displacement (ctRSD) circuits are an emerging tool
for programmable molecular computation, with potential applications spanning in vitro …

Engineering an Escherichia coli based in vivo mRNA manufacturing platform

E Curry, G Muir, J Qu, Z Kis, M Hulley… - Biotechnology and …, 2024 - Wiley Online Library
Synthetic mRNA is currently produced in standardized in vitro transcription systems.
However, this one‐size‐fits‐all approach has associated drawbacks in supply chain …