Machine learning-guided protein engineering
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …
machine learning methods. These methods leverage existing experimental and simulation …
Machine learning in enzyme engineering
Enzyme engineering plays a central role in developing efficient biocatalysts for
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …
SoluProt: prediction of soluble protein expression in Escherichia coli
J Hon, M Marusiak, T Martinek, A Kunka… - …, 2021 - academic.oup.com
Motivation Poor protein solubility hinders the production of many therapeutic and industrially
useful proteins. Experimental efforts to increase solubility are plagued by low success rates …
useful proteins. Experimental efforts to increase solubility are plagued by low success rates …
Prediction of protein solubility based on sequence physicochemical patterns and distributed representation information with DeepSoluE
Background Protein solubility is a precondition for efficient heterologous protein expression
at the basis of most industrial applications and for functional interpretation in basic research …
at the basis of most industrial applications and for functional interpretation in basic research …
Computational design of stable and soluble biocatalysts
M Musil, H Konegger, J Hon, D Bednar… - Acs Catalysis, 2018 - ACS Publications
Natural enzymes are delicate biomolecules possessing only marginal thermodynamic
stability. Poorly stable, misfolded, and aggregated proteins lead to huge economic losses in …
stability. Poorly stable, misfolded, and aggregated proteins lead to huge economic losses in …
DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks
M Madani, K Lin, A Tarakanova - International Journal of Molecular …, 2021 - mdpi.com
Protein solubility is an important thermodynamic parameter that is critical for the
characterization of a protein's function, and a key determinant for the production yield of a …
characterization of a protein's function, and a key determinant for the production yield of a …
NetSolP: predicting protein solubility in Escherichia coli using language models
Motivation Solubility and expression levels of proteins can be a limiting factor for large-scale
studies and industrial production. By determining the solubility and expression directly from …
studies and industrial production. By determining the solubility and expression directly from …
A descriptor set for quantitative structure‐property relationship prediction in biologics
There has been a remarkable increase in the number of biologics, especially monoclonal
antibodies, in the market over the last decade. In addition to attaining the desired binding to …
antibodies, in the market over the last decade. In addition to attaining the desired binding to …
PLM_Sol: predicting protein solubility by benchmarking multiple protein language models with the updated Escherichia coli protein solubility dataset
X Zhang, X Hu, T Zhang, L Yang, C Liu… - Briefings in …, 2024 - academic.oup.com
Protein solubility plays a crucial role in various biotechnological, industrial, and biomedical
applications. With the reduction in sequencing and gene synthesis costs, the adoption of …
applications. With the reduction in sequencing and gene synthesis costs, the adoption of …
AlphaFold 2-based stacking model for protein solubility prediction and its transferability on seed storage proteins
Accurate protein solubility prediction is crucial in screening suitable candidates for food
application. Existing models often rely only on sequences, overlooking important structural …
application. Existing models often rely only on sequences, overlooking important structural …