[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

Biofilm formation and inhibition mediated by bacterial quorum sensing

Y Wang, Z Bian, Y Wang - Applied Microbiology and Biotechnology, 2022 - Springer
As a complex microbial aggregate, biofilm is a group behavior of bacterial ability to adapt to
the environment. Bacteria produce biofilm substrates that enhance their tolerance to stress …

Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants

M Yuan, D Huang, CCD Lee, NC Wu, AM Jackson… - Science, 2021 - science.org
Neutralizing antibodies (nAbs) elicited against the receptor binding site (RBS) of the spike
protein of wild-type severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are …

The impact of genetic diversity on gene essentiality within the Escherichia coli species

F Rousset, J Cabezas-Caballero, F Piastra-Facon… - Nature …, 2021 - nature.com
Bacteria from the same species can differ widely in their gene content. In Escherichia coli,
the set of genes shared by all strains, known as the core genome, represents about half the …

Cross-species RNA-seq for deciphering host–microbe interactions

AJ Westermann, J Vogel - Nature Reviews Genetics, 2021 - nature.com
The human body is constantly exposed to microorganisms, which entails manifold
interactions between human cells and diverse commensal or pathogenic bacteria. The …

CRISPRi-seq for genome-wide fitness quantification in bacteria

V de Bakker, X Liu, AM Bravo, JW Veening - Nature Protocols, 2022 - nature.com
CRISPR interference (CRISPRi) is a powerful tool to link essential and nonessential genes
to specific phenotypes and to explore their functions. Here we describe a protocol for …

Gene silencing through CRISPR interference in bacteria: current advances and future prospects

R Zhang, W Xu, S Shao, Q Wang - Frontiers in Microbiology, 2021 - frontiersin.org
Functional genetic screening is an important method that has been widely used to explore
the biological processes and functional annotation of genetic elements. CRISPR/Cas …

Next-generation microbiology: from comparative genomics to gene function

CM Kobras, AK Fenton, SK Sheppard - Genome Biology, 2021 - Springer
Microbiology is at a turning point in its 120-year history. Widespread next-generation
sequencing has revealed genetic complexity among bacteria that could hardly have been …

Mechanisms underlying gut microbiota–host interactions in insects

K Schmidt, P Engel - Journal of Experimental Biology, 2021 - journals.biologists.com
Insects are the most diverse group of animals and colonize almost all environments on our
planet. This diversity is reflected in the structure and function of the microbial communities …

Synthetic genetic oscillators demonstrate the functional importance of phenotypic variation in pneumococcal-host interactions

AS Rueff, R Van Raaphorst, SD Aggarwal… - Nature …, 2023 - nature.com
Phenotypic variation is the phenomenon in which clonal cells display different traits even
under identical environmental conditions. This plasticity is thought to be important for …