Opportunities and obstacles for deep learning in biology and medicine

T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …

An overview of artificial intelligence in oncology

E Farina, JJ Nabhen, MI Dacoregio, F Batalini… - Future science …, 2022 - Taylor & Francis
Cancer is associated with significant morbimortality globally. Advances in screening,
diagnosis, management and survivorship were substantial in the last decades, however …

Enhancing activity prediction models in drug discovery with the ability to understand human language

P Seidl, A Vall, S Hochreiter… - … on Machine Learning, 2023 - proceedings.mlr.press
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …

druGAN: an advanced generative adversarial autoencoder model for de novo generation of new molecules with desired molecular properties in silico

A Kadurin, S Nikolenko, K Khrabrov… - Molecular …, 2017 - ACS Publications
Deep generative adversarial networks (GANs) are the emerging technology in drug
discovery and biomarker development. In our recent work, we demonstrated a proof-of …

Prediction of Clinical Trials Outcomes Based on Target Choice and Clinical Trial Design with Multi‐Modal Artificial Intelligence

A Aliper, R Kudrin, D Polykovskiy… - Clinical …, 2023 - Wiley Online Library
Drug discovery and development is a notoriously risky process with high failure rates at
every stage, including disease modeling, target discovery, hit discovery, lead optimization …

Will artificial intelligence for drug discovery impact clinical pharmacology?

A Zhavoronkov, Q Vanhaelen… - Clinical Pharmacology & …, 2020 - Wiley Online Library
As the field of artificial intelligence and machine learning (AI/ML) for drug discovery is rapidly
advancing, we address the question “What is the impact of recent AI/ML trends in the area of …

[HTML][HTML] Hint: Hierarchical interaction network for clinical-trial-outcome predictions

T Fu, K Huang, C Xiao, LM Glass, J Sun - Patterns, 2022 - cell.com
Clinical trials are crucial for drug development but often face uncertain outcomes due to
safety, efficacy, or patient-recruitment problems. We propose the Hierarchical Interaction …

Prediction of human cytochrome P450 inhibition using a multitask deep autoencoder neural network

X Li, Y Xu, L Lai, J Pei - Molecular pharmaceutics, 2018 - ACS Publications
Adverse side effects of drug–drug interactions induced by human cytochrome P450
(CYP450) inhibition is an important consideration in drug discovery. It is highly desirable to …

Machine learning and deep learning in data-driven decision making of drug discovery and challenges in high-quality data acquisition in the pharmaceutical industry

SA Kumar, TD Ananda Kumar… - Future Medicinal …, 2022 - Taylor & Francis
Predicting novel small molecule bioactivities for the target deconvolution, hit-to-lead
optimization in drug discovery research, requires molecular representation. Previous reports …

[HTML][HTML] Chemical representation learning for toxicity prediction

J Born, G Markert, N Janakarajan, TB Kimber… - Digital …, 2023 - pubs.rsc.org
Undesired toxicity is a major hindrance to drug discovery and largely responsible for high
attrition rates in early stages. This calls for new, reliable, and interpretable molecular …