[HTML][HTML] Computational modeling, formal analysis, and tools for systems biology
E Bartocci, P Lió - PLoS computational biology, 2016 - journals.plos.org
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …
and analysis techniques employed in systems biology. In recent years, a number of …
Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves
A Goldbeter - … Transactions of the Royal Society A …, 2018 - royalsocietypublishing.org
The goal of this review article is to assess how relevant is the concept of dissipative structure
for understanding the dynamical bases of non-equilibrium self-organization in biological …
for understanding the dynamical bases of non-equilibrium self-organization in biological …
[图书][B] The mathematics and mechanics of biological growth
A Goriely - 2017 - books.google.com
This monograph presents a general mathematical theory for biological growth. It provides
both a conceptual and a technical foundation for the understanding and analysis of …
both a conceptual and a technical foundation for the understanding and analysis of …
Multi-scale modeling of tissues using CompuCell3D
The study of how cells interact to produce tissue development, homeostasis, or diseases
was, until recently, almost purely experimental. Now, multi-cell computer simulation …
was, until recently, almost purely experimental. Now, multi-cell computer simulation …
[HTML][HTML] Comparing individual-based approaches to modelling the self-organization of multicellular tissues
The coordinated behaviour of populations of cells plays a central role in tissue growth and
renewal. Cells react to their microenvironment by modulating processes such as movement …
renewal. Cells react to their microenvironment by modulating processes such as movement …
Plant synthetic biology
W Liu, CN Stewart - Trends in Plant Science, 2015 - cell.com
Plant synthetic biology is an emerging field that combines engineering principles with plant
biology toward the design and production of new devices. This emerging field should play …
biology toward the design and production of new devices. This emerging field should play …
[HTML][HTML] Cellular potts modeling of tumor growth, tumor invasion, and tumor evolution
A Szabó, RMH Merks - Frontiers in oncology, 2013 - frontiersin.org
Despite a growing wealth of available molecular data, the growth of tumors, invasion of
tumors into healthy tissue, and response of tumors to therapies are still poorly understood …
tumors into healthy tissue, and response of tumors to therapies are still poorly understood …
[HTML][HTML] Agent-based modeling of morphogenetic systems: Advantages and challenges
The complexity of morphogenesis poses a fundamental challenge to understanding the
mechanisms governing the formation of biological patterns and structures. Over the past …
mechanisms governing the formation of biological patterns and structures. Over the past …
Consensus report on the future of animal-free systemic toxicity testing
M Leist, N Hasiwa, C Rovida, M Daneshian… - 2014 - kops.uni-konstanz.de
Since March 2013, animal use for cosmetics testing for the European market has been
banned. This requires a renewed view on risk assessment in this field. However, in other …
banned. This requires a renewed view on risk assessment in this field. However, in other …
libRoadRunner: a high performance SBML simulation and analysis library
Motivation: This article presents libRoadRunner, an extensible, high-performance, cross-
platform, open-source software library for the simulation and analysis of models expressed …
platform, open-source software library for the simulation and analysis of models expressed …