Mechanisms of cellular mRNA transcript homeostasis
S Berry, L Pelkmans - Trends in Cell Biology, 2022 - cell.com
For most genes, mRNA transcript abundance scales with cell size to ensure a constant
concentration. Scaling of mRNA synthesis rates with cell size plays an important role, with …
concentration. Scaling of mRNA synthesis rates with cell size plays an important role, with …
Multiplex protein imaging in tumour biology
N de Souza, S Zhao, B Bodenmiller - Nature Reviews Cancer, 2024 - nature.com
Tissue imaging has become much more colourful in the past decade. Advances in both
experimental and analytical methods now make it possible to image protein markers in …
experimental and analytical methods now make it possible to image protein markers in …
Pooled multicolour tagging for visualizing subcellular protein dynamics
A Reicher, J Reiniš, M Ciobanu, P Růžička… - Nature Cell …, 2024 - nature.com
Imaging-based methods are widely used for studying the subcellular localization of proteins
in living cells. While routine for individual proteins, global monitoring of protein dynamics …
in living cells. While routine for individual proteins, global monitoring of protein dynamics …
Dynamic label-free analysis of SARS-CoV-2 infection reveals virus-induced subcellular remodeling
N Saunders, B Monel, N Cayet, L Archetti… - Nature …, 2024 - nature.com
Assessing the impact of SARS-CoV-2 on organelle dynamics allows a better understanding
of the mechanisms of viral replication. We combine label-free holotomographic microscopy …
of the mechanisms of viral replication. We combine label-free holotomographic microscopy …
Graph Fourier transform for spatial omics representation and analyses of complex organs
Spatial omics technologies decipher functional components of complex organs at cellular
and subcellular resolutions. We introduce Spatial Graph Fourier Transform (SpaGFT) and …
and subcellular resolutions. We introduce Spatial Graph Fourier Transform (SpaGFT) and …
Bento: a toolkit for subcellular analysis of spatial transcriptomics data
The spatial organization of molecules in a cell is essential for their functions. While current
methods focus on discerning tissue architecture, cell–cell interactions, and spatial …
methods focus on discerning tissue architecture, cell–cell interactions, and spatial …
[HTML][HTML] Global control of RNA polymerase II
Abstract RNA polymerase II (Pol II) is the multi-protein complex responsible for transcribing
all protein-coding messenger RNA (mRNA). Most research on gene regulation is focused on …
all protein-coding messenger RNA (mRNA). Most research on gene regulation is focused on …
Recent advancements in subcellular proteomics: growing impact of organellar protein niches on the understanding of cell biology
V Bhushan, A Nita-Lazar - Journal of Proteome Research, 2024 - ACS Publications
The mammalian cell is a complex entity, with membrane-bound and membrane-less
organelles playing vital roles in regulating cellular homeostasis. Organellar protein niches …
organelles playing vital roles in regulating cellular homeostasis. Organellar protein niches …
Differential labelling of human sub-cellular compartments with fluorescent dye esters and expansion microscopy
TMD Sheard, TB Shakespeare, RS Seehra… - Nanoscale, 2023 - pubs.rsc.org
Amine-reactive esters of aromatic fluorescent dyes are emerging as imaging probes for
nondescript staining of cellular and tissue architectures. We characterised the staining …
nondescript staining of cellular and tissue architectures. We characterised the staining …
MIM-CyCIF: masked imaging modeling for enhancing cyclic immunofluorescence (CyCIF) with panel reduction and imputation
Abstract Cyclic Immunofluorescence (CyCIF) can quantify multiple biomarkers, but panel
capacity is limited by technical challenges. We propose a computational panel reduction …
capacity is limited by technical challenges. We propose a computational panel reduction …