EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
J Sperschneider, PN Dodds - Molecular plant-microbe …, 2022 - Am Phytopath Society
Many fungi and oomycete species are devasting plant pathogens. These eukaryotic
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …
Bioinformatic prediction of plant–pathogenicity effector proteins of fungi
Highlights•Review of current methods in fungal plant pathogenicity effector protein
prediction.•Recent advances have been made in structural and machine learning-based …
prediction.•Recent advances have been made in structural and machine learning-based …
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
Pathogens secrete effector proteins and many operate inside plant cells to enable infection.
Some effectors have been found to enter subcellular compartments by mimicking host …
Some effectors have been found to enter subcellular compartments by mimicking host …
Seeking the interspecies crosswalk for filamentous microbe effectors
N Stuer, P Van Damme, S Goormachtig… - Trends in Plant …, 2023 - cell.com
Both pathogenic and symbiotic microorganisms modulate the immune response and
physiology of their host to establish a suitable niche. Key players in mediating colonization …
physiology of their host to establish a suitable niche. Key players in mediating colonization …
ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning
J Sperschneider, PN Dodds, KB Singh… - New …, 2018 - Wiley Online Library
The plant apoplast is integral to intercellular signalling, transport and plant–pathogen
interactions. Plant pathogens deliver effectors both into the apoplast and inside host cells …
interactions. Plant pathogens deliver effectors both into the apoplast and inside host cells …
Computational Structural Genomics Unravels Common Folds and Novel Families in the Secretome of Fungal Phytopathogen Magnaporthe oryzae
K Seong, KV Krasileva - Molecular Plant-Microbe Interactions, 2021 - Am Phytopath Society
Structural biology has the potential to illuminate the evolution of pathogen effectors and their
commonalities that cannot be readily detected at the primary sequence level. Recent …
commonalities that cannot be readily detected at the primary sequence level. Recent …
Key processes required for the different stages of fungal carnivory by a nematode-trapping fungus
HC Lin, GVD de Ulzurrun, SA Chen, CT Yang… - PLoS …, 2023 - journals.plos.org
Nutritional deprivation triggers a switch from a saprotrophic to predatory lifestyle in soil-
dwelling nematode-trapping fungi (NTF). In particular, the NTF Arthrobotrys oligospora …
dwelling nematode-trapping fungi (NTF). In particular, the NTF Arthrobotrys oligospora …
Genomic, network, and phylogenetic analysis of the oomycete effector arsenal
J McGowan, DA Fitzpatrick - MSphere, 2017 - Am Soc Microbiol
The oomycetes are a class of microscopic, filamentous eukaryotes within the stramenopiles-
alveolate-Rhizaria (SAR) supergroup and include ecologically significant animal and plant …
alveolate-Rhizaria (SAR) supergroup and include ecologically significant animal and plant …
The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited
M Lahfa, P Barthe, K De Guillen, S Cesari… - PLoS …, 2024 - journals.plos.org
Magnaporthe AVRs and ToxB-like (MAX) effectors constitute a family of secreted virulence
proteins in the fungus Pyricularia oryzae (syn. Magnaporthe oryzae), which causes blast …
proteins in the fungus Pyricularia oryzae (syn. Magnaporthe oryzae), which causes blast …