Generative artificial intelligence in drug discovery: basic framework, recent advances, challenges, and opportunities

A Gangwal, A Ansari, I Ahmad, AK Azad… - Frontiers in …, 2024 - frontiersin.org
There are two main ways to discover or design small drug molecules. The first involves fine-
tuning existing molecules or commercially successful drugs through quantitative structure …

Wielding the power of interactive molecular simulations

A Lanrezac, N Férey, M Baaden - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Since the dawn of the computer age, scientists have designed devices to represent
molecular structures and developed tools to simulate their dynamic behavior in silico. To this …

Optimizing drug design by merging generative ai with active learning frameworks

I Filella-Merce, A Molina, M Orzechowski, L Díaz… - arXiv preprint arXiv …, 2023 - arxiv.org
Traditional drug discovery programs are being transformed by the advent of machine
learning methods. Among these, Generative AI methods (GM) have gained attention due to …

A field guide for implementing a flipped classroom

P Poulain, M Bertrand, H Dufour… - … and Molecular Biology …, 2023 - Wiley Online Library
The way flipped classrooms are perceived and even practiced by teachers is sometimes
approximate. For instance, while the Covid‐19 pandemic has pushed many universities to …

PyRosetta Jupyter notebooks teach biomolecular structure prediction and design

KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov… - The …, 2021 - meridian.allenpress.com
Biomolecular structure drives function, and computational capabilities have progressed such
that the prediction and computational design of biomolecular structures is increasingly …

Increasing faculty involvement in the undergraduate interdisciplinary learning experience

DD Lent, KM Estes, AK Hansen - Integrative and comparative …, 2021 - academic.oup.com
Synospis More and more, we see that advances in life sciences are made because of
Interdisciplinary collaborations. These collaborations are the future—they are necessary to …

Enhancing teaching effectiveness in biochemistry labs: Author reflections and improvement strategies

M Costabile, B Simpson, J Turkanovic… - Biochemistry and …, 2024 - Wiley Online Library
This article details the outcome of a joint reflective approach undertaken by the authors to
identify common difficulties experienced by 2nd‐year undergraduate Biochemistry students …

The fine art of preparing membrane transport proteins for biomolecular simulations: concepts and practical considerations

H Shiref, S Bergman, S Clivio, MA Sahai - Methods, 2021 - Elsevier
Molecular dynamics (MD) simulations have developed into an invaluable tool in bimolecular
research, due to the capability of the method in capturing molecular events and structural …

Desain dan optimasi primer gen pengkode MRPA Trypanosoma evansi dan penerapan pada pembelajaran biologi molekuler

MM Nuryady, H Husamah… - … Ilmu Pendidikan: e …, 2020 - journal-center.litpam.com
Penelitian molekuler untuk menemukan gen pengkode resistensi Multidrug Resistance
Prtotein A (MRPA) T. evansi dan perbanyakan gen secara Polimeration Chain Reaction …

Interactive molecular dynamics

A Lanrezac, N Férey, M Baaden - Comprehensive Computational …, 2024 - hal.science
Interactive Molecular Dynamics (IMD) is a real-time simulation technique that allows
scientists to interact with virtual molecular systems. Users can observe a simulation in …