[HTML][HTML] The role of intestinal microbiota and its metabolites in intestinal and extraintestinal organ injury induced by intestinal ischemia reperfusion injury
F Deng, ZB Lin, QS Sun, Y Min, Y Zhang… - … journal of biological …, 2022 - ncbi.nlm.nih.gov
Intestinal ischemia/reperfusion (I/R) is a common pathophysiological process in clinical
severe patients, and the effect of intestinal I/R injury on the patient's systemic …
severe patients, and the effect of intestinal I/R injury on the patient's systemic …
Advances in the clinical use of metaproteomics
M Wolf, K Schallert, L Knipper, A Sickmann… - Expert review of …, 2023 - Taylor & Francis
Introduction Investigating the taxonomic and functional composition of human microbiomes
can aid in the understanding of disease etiologies, diagnosis, and therapy monitoring for …
can aid in the understanding of disease etiologies, diagnosis, and therapy monitoring for …
[HTML][HTML] metaExpertPro: a computational workflow for metaproteomics spectral library construction and data-independent acquisition mass spectrometry data analysis
Y Sun, Z Xing, S Liang, Z Miao, L Zhuo, W Jiang… - Molecular & Cellular …, 2024 - Elsevier
Highlights•A one-stop platform for large-scale DIA, including diaPASEF metaproteomics
analysis.•metaExpertPro outperformed three other tools in peptide identifications from a …
analysis.•metaExpertPro outperformed three other tools in peptide identifications from a …
A universal database reduction method based on the sequence tag strategy to facilitate large-scale database search in proteomics
KF Wang, YZ Wu, H Chi - International Journal of Mass Spectrometry, 2023 - Elsevier
Mass spectrometry-based metaproteomic and proteogenomic studies tend to use large-
scale databases that may contain too many irrelevant or artificially constructed proteins …
scale databases that may contain too many irrelevant or artificially constructed proteins …
Critical steps in an environmental metaproteomics workflow
DJ Nebauer, LA Pearson… - Environmental …, 2024 - Wiley Online Library
Environmental metaproteomics is a rapidly advancing field that provides insights into the
structure, dynamics, and metabolic activity of microbial communities. As the field is still …
structure, dynamics, and metabolic activity of microbial communities. As the field is still …
A complementary metaproteomic approach to interrogate microbiome cultivated from clinical colon biopsies
The human gut microbiome plays a vital role in preserving individual health and is intricately
involved in essential functions. Imbalances or dysbiosis within the microbiome can …
involved in essential functions. Imbalances or dysbiosis within the microbiome can …
NovoLign: metaproteomics by sequence alignment
H Kleikamp, R van der Zwaan, R van Valderen… - bioRxiv, 2024 - biorxiv.org
Tremendous advances in mass spectrometric and bioinformatic approaches have expanded
proteomics into the field of microbial ecology. The commonly used spectral annotation …
proteomics into the field of microbial ecology. The commonly used spectral annotation …
Comparative metaproteomics of microbial communities in fermented grains for Baijiu production using two pretreatment methods.
X Guo, Y Tang, X Tian, J He, C Liu, J Feng, M Liu - 2022 - cabidigitallibrary.org
In this study, microbial proteins were extracted by Tris/phenol extraction-
methanol/ammonium acetate precipitation from fermented grains for nongxiangxing baijiu …
methanol/ammonium acetate precipitation from fermented grains for nongxiangxing baijiu …