Directed evolution of microbial communities

Á Sánchez, JCC Vila, CY Chang… - Annual review of …, 2021 - annualreviews.org
Directed evolution is a form of artificial selection that has been used for decades to find
biomolecules and organisms with new or enhanced functional traits. Directed evolution can …

Multi-replicated enrichment communities as a model system in microbial ecology

S Estrela, Á Sánchez, M Rebolleda-Gómez - Frontiers in Microbiology, 2021 - frontiersin.org
Recent advances in robotics and affordable genomic sequencing technologies have made it
possible to establish and quantitatively track the assembly of enrichment communities in …

Emergent coexistence in multispecies microbial communities

CY Chang, D Bajić, JCC Vila, S Estrela, A Sanchez - Science, 2023 - science.org
Understanding the mechanisms that maintain microbial biodiversity is a critical aspiration in
ecology. Past work on microbial coexistence has largely focused on species pairs, but it is …

Complexity–stability trade-off in empirical microbial ecosystems

Y Yonatan, G Amit, J Friedman, A Bashan - Nature Ecology & Evolution, 2022 - nature.com
May's stability theory, which holds that large ecosystems can be stable up to a critical level of
complexity, a product of the number of resident species and the intensity of their interactions …

Non-additive microbial community responses to environmental complexity

AR Pacheco, ML Osborne, D Segrè - Nature communications, 2021 - nature.com
Environmental composition is a major, though poorly understood, determinant of
microbiome dynamics. Here we ask whether general principles govern how microbial …

Unique microbiome in organic matter–polluted urban rivers

Z Liang, A Abdillah, W Fang, R Qiu, B Mai… - Global Change …, 2023 - Wiley Online Library
Approximately half of the global annual production of wastewater is released untreated into
aquatic environments, which results in worldwide organic matter pollution in urban rivers …

Universal dynamics of microbial communities in full-scale textile wastewater treatment plants and system prediction by machine learning

J Yu, SN Tang, PKH Lee - Environmental Science & Technology, 2023 - ACS Publications
The performance of full-scale biological wastewater treatment plants (WWTPs) depends on
the operational and environmental conditions of treatment systems. However, we do not …

Universal gut microbial relationships in the gut microbiome of wild baboons

KE Roche, JR Bjork, MR Dasari, L Grieneisen… - Elife, 2023 - elifesciences.org
Ecological relationships between bacteria mediate the services that gut microbiomes
provide to their hosts. Knowing the overall direction and strength of these relationships is …

[HTML][HTML] Evidence for saponin diversity–mycobiome links and conservatism of plant–fungi interaction patterns across Holarctic disjunct Panax species

G Zhang, F Wei, Z Chen, Y Wang, S Jiao… - Science of the Total …, 2022 - Elsevier
Although interplays between plant and coevolved microorganisms are believed to drive
landscape formation and ecosystem services, the relationships between the mycobiome and …

Diversity begets diversity under microbial niche construction

S Estrela, J Diaz-Colunga, JCC Vila… - BioRxiv, 2022 - biorxiv.org
Microbial interactions are expected to modulate microbial diversity, but whether they inhibit
or stimulate further diversity in complex microbial communities, and how, remains poorly …